Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHMW6_RS03290 Genome accession   NZ_CP171977
Coordinates   589639..591285 (-) Length   548 a.a.
NCBI ID   WP_395405516.1    Uniprot ID   -
Organism   Pseudoduganella sp. UC29_106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 584639..596285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHMW6_RS03260 (ACHMW6_03250) - 587478..587675 (-) 198 WP_395405505.1 DUF1840 family protein -
  ACHMW6_RS03265 (ACHMW6_03255) - 587720..587827 (-) 108 Protein_549 DUF1840 domain-containing protein -
  ACHMW6_RS03270 (ACHMW6_03260) - 587949..588416 (-) 468 WP_395405507.1 hypothetical protein -
  ACHMW6_RS03275 (ACHMW6_03265) - 588413..588856 (-) 444 WP_395405509.1 DUF6691 family protein -
  ACHMW6_RS03280 (ACHMW6_03270) - 588861..589280 (-) 420 WP_395405511.1 YeeE/YedE family protein -
  ACHMW6_RS03285 (ACHMW6_03275) - 589277..589585 (-) 309 WP_395405513.1 ArsR/SmtB family transcription factor -
  ACHMW6_RS03290 (ACHMW6_03280) comM 589639..591285 (-) 1647 WP_395405516.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHMW6_RS03295 (ACHMW6_03285) - 591358..591606 (-) 249 WP_395405518.1 accessory factor UbiK family protein -
  ACHMW6_RS03300 (ACHMW6_03290) - 591815..592582 (+) 768 WP_395405520.1 TorF family putative porin -
  ACHMW6_RS03305 (ACHMW6_03295) - 592594..592932 (+) 339 WP_395405522.1 P-II family nitrogen regulator -
  ACHMW6_RS03310 (ACHMW6_03300) - 592945..594486 (+) 1542 WP_395405524.1 ammonium transporter -
  ACHMW6_RS03315 (ACHMW6_03305) gshA 594680..595979 (+) 1300 Protein_559 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 548 a.a.        Molecular weight: 58863.30 Da        Isoelectric Point: 7.7239

>NTDB_id=1064688 ACHMW6_RS03290 WP_395405516.1 589639..591285(-) (comM) [Pseudoduganella sp. UC29_106]
MSIAVLKSRALAGMQAPEVSVEVHLANGLPAFHIVGLADTEVKESRDRVRAAIINTGYDMPAQRITVSLAPADLPKESGR
FDLPIALGILAASGQVPCEALERYEFAGELSLTGELRPIRGALAMTYAMHRDSTRSGRAFILPHANAEEAALVHDAAIYP
AATLLQVCAHFGGTPTLANPEDAGRGWSDGERPPLDGSGVGSDCVAPARPRKRRVPDEPVFALERYQASPLPLASPYLDF
ADVKGQQHAKRALEVAAAGRHSILLIGPPGAGKTMLASRFAGVLPAMTDDEALEAAAVQSLIGGFSLTGWKTRPFRAPHH
TSSGAALVGGGSVPRPGEISLAHCGVLFLDELPEFDRRVLEVLREPLESGHVTISRAARHADFPARFQLVAAMNPCPCGY
LGHPGGQCRCTPDAILRYQGRVSGPLLDRIDMQIEVGPVPATVLEADASGETSDRIANRVEAAFKRQLMRQQKSNQELTP
REIDRYCKPNAAGIDVLRAAMAKFDWSARSYHRVLRVARTIADLAGERTVAPHHVSEAIQMRRGLRPF

Nucleotide


Download         Length: 1647 bp        

>NTDB_id=1064688 ACHMW6_RS03290 WP_395405516.1 589639..591285(-) (comM) [Pseudoduganella sp. UC29_106]
ATGAGTATTGCAGTCCTGAAAAGCCGCGCCCTGGCCGGAATGCAGGCGCCGGAAGTTTCGGTGGAAGTGCACTTGGCTAA
CGGCTTGCCGGCTTTCCATATCGTCGGCCTCGCCGACACTGAGGTCAAAGAGTCGCGCGACCGCGTGCGCGCGGCCATCA
TCAACACGGGCTACGACATGCCGGCCCAGCGCATCACCGTCAGCCTGGCGCCGGCCGACCTGCCGAAGGAGTCCGGCCGC
TTCGACTTGCCGATCGCGCTCGGCATCCTCGCCGCCTCCGGACAGGTGCCCTGCGAAGCCCTGGAGCGCTATGAGTTTGC
CGGCGAACTGTCGCTGACGGGCGAGCTGCGCCCCATCCGCGGCGCTCTGGCCATGACTTACGCCATGCACCGCGATTCCA
CCCGCAGCGGACGCGCCTTCATCCTGCCCCATGCCAATGCCGAGGAAGCCGCGCTGGTGCACGACGCTGCCATTTATCCC
GCCGCCACCCTGCTCCAGGTCTGCGCCCACTTCGGCGGCACACCTACGCTCGCCAATCCGGAAGATGCCGGACGCGGCTG
GAGCGATGGCGAGCGACCGCCGCTGGACGGTTCCGGCGTCGGCTCGGACTGCGTCGCCCCTGCCCGCCCGCGCAAACGGC
GCGTGCCGGATGAGCCCGTATTTGCGCTGGAGCGCTACCAGGCATCGCCGCTGCCGCTGGCCTCCCCCTACCTCGACTTC
GCCGACGTCAAAGGCCAGCAGCACGCCAAGCGCGCACTGGAAGTCGCCGCGGCAGGCCGCCATTCGATCTTGCTGATCGG
CCCGCCCGGCGCCGGCAAGACGATGCTGGCCAGCCGTTTCGCCGGCGTCCTGCCCGCGATGACCGATGACGAAGCGCTGG
AGGCCGCCGCCGTCCAATCCCTGATCGGCGGCTTTTCGCTGACTGGCTGGAAAACCAGGCCCTTCCGTGCGCCCCACCAC
ACTTCCTCCGGCGCGGCGCTGGTGGGCGGCGGCAGCGTGCCGCGCCCCGGCGAGATCTCGCTCGCCCATTGCGGCGTGCT
CTTCCTCGATGAACTGCCGGAATTCGACCGCCGCGTACTGGAAGTGCTGCGCGAACCGCTGGAATCGGGCCACGTGACGA
TCTCGCGCGCGGCACGGCACGCCGACTTCCCGGCGCGCTTCCAGCTGGTCGCCGCCATGAACCCTTGTCCCTGCGGCTAC
CTCGGCCATCCCGGTGGCCAGTGTCGCTGCACGCCGGACGCTATCCTGCGCTACCAGGGCCGCGTTTCCGGGCCGCTACT
CGACCGCATCGACATGCAGATCGAAGTCGGTCCTGTTCCAGCGACAGTGCTGGAAGCGGACGCCAGCGGCGAGACGTCAG
ACCGGATCGCCAACCGTGTCGAAGCGGCCTTCAAGCGGCAGCTGATGCGCCAGCAAAAGAGCAACCAGGAGCTCACCCCG
CGCGAAATCGACCGCTACTGCAAGCCGAACGCGGCCGGCATCGACGTCCTGCGCGCTGCAATGGCCAAGTTCGACTGGTC
CGCCCGCTCCTACCACCGCGTGTTGCGCGTCGCGCGCACCATTGCCGACCTGGCAGGAGAGCGCACGGTCGCGCCGCATC
ACGTCAGTGAAGCCATTCAGATGCGGCGGGGCTTACGGCCATTCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(239-440)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(450-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.174

99.453

0.489
  comM Vibrio campbellii strain DS40M4

48.897

99.27

0.485
  comM Haemophilus influenzae Rd KW20

47.628

100

0.476
  comM Glaesserella parasuis strain SC1401

47.339

99.453

0.471
  comM Legionella pneumophila str. Paris

45.389

100

0.458
  comM Legionella pneumophila strain ERS1305867

45.389

100

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.303

99.453

0.431

Multiple sequence alignment