Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHFJ9_RS22990 Genome accession   NZ_CP171887
Coordinates   3223499..3225022 (-) Length   507 a.a.
NCBI ID   WP_006742918.1    Uniprot ID   -
Organism   Vibrio sp. D3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3218499..3230022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS22970 (ACHFJ9_22970) - 3219787..3220773 (+) 987 WP_395357488.1 serine/threonine protein kinase -
  ACHFJ9_RS22975 (ACHFJ9_22975) - 3220808..3221410 (+) 603 WP_005379036.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACHFJ9_RS22980 (ACHFJ9_22980) - 3221457..3222335 (-) 879 WP_046874593.1 acyltransferase -
  ACHFJ9_RS22985 (ACHFJ9_22985) - 3222485..3223441 (+) 957 WP_170892806.1 DUF2860 domain-containing protein -
  ACHFJ9_RS22990 (ACHFJ9_22990) comM 3223499..3225022 (-) 1524 WP_006742918.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHFJ9_RS22995 (ACHFJ9_22995) ilvG 3225487..3227133 (+) 1647 WP_176319954.1 acetolactate synthase 2 catalytic subunit -
  ACHFJ9_RS23000 (ACHFJ9_23000) ilvM 3227145..3227429 (+) 285 WP_005378958.1 acetolactate synthase 2 small subunit -
  ACHFJ9_RS23005 (ACHFJ9_23005) ilvE 3227442..3228380 (+) 939 WP_005378953.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55047.16 Da        Isoelectric Point: 8.7823

>NTDB_id=1064672 ACHFJ9_RS22990 WP_006742918.1 3223499..3225022(-) (comM) [Vibrio sp. D3]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALEASKIQRHLVVPHVNGDQAALVGKEQHKSAQSL
LEVCAELCGQHRLNLFQTPKRKIVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKSRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTAIVKERVNHARTNMLNRSGKVNALLGSREIEAFCPLHKSDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGAEQ
IERAHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1064672 ACHFJ9_RS22990 WP_006742918.1 3223499..3225022(-) (comM) [Vibrio sp. D3]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGCGTCGGGGTGCAAGCGCCATCGGTTAGTGTAGAAGTTCATATTAGCAA
TGGTATGCCCGGGTTTACCTTGGTAGGGCTGCCAGAGACGACGGTAAAAGAGTCCAAAGATCGCGTTCGTAGCGCGATCA
TTAATTCTAATTTTCAGTTTCCAGCTAAGCGGATCACCGTTAATTTAGCTCCAGCAGATTTGCCCAAAGAGGGAGGGCGT
TTTGATCTTCCTATCGCATTGGGGATTTTGGCCGCTTCGGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGCGAGTTAGCGCTATCTGGTGGTCTGAGACCTGTAAAAGGTGTGCTGCCTGCTGCGCTGGAAGCCAGTAAGATTCAAC
GTCATTTAGTGGTCCCACATGTGAATGGCGATCAGGCGGCGCTGGTGGGGAAGGAACAACATAAATCGGCCCAATCATTA
CTGGAAGTATGTGCCGAGCTTTGTGGCCAACATCGGCTGAATCTTTTTCAAACGCCTAAGCGAAAAATAGTCGAAAAACA
TGGTCGAGACTTACAAGATATTATTGGCCAACAACAAGGTAAGCGCGCACTGGAGATTGCTGCCGCTGGAAACCACAACT
TACTTTTCCTTGGCCCGCCAGGTACTGGAAAAACCATGTTGGCTTCGCGTTTGTGTGACTTATTACCGGAAATGAGTGAC
GAAGAAGCAATGGAAACCGCTTCGGTGGCATCGTTGACTCAGAGTGAAATTAATGAGCATAACTGGAAGTCGCGTCCGTT
TCGTTCTCCGCATCATTCAAGTTCAATGGCGGCATTAGTCGGCGGTGGTTCGGTCCCCAGGCCAGGGGAGATCTCTTTAG
CCCACAACGGCTTGTTGTTTCTCGACGAAATGCCCGAATTTGACCGAAAGGTGCTGGACTCGTTACGCGAACCGCTCGAA
TCTGGTGAGATCATTATCTCTCGGGCGCAAGGTAAAACACGTTTTCCGGCTCGCTTCCAATTAGTTGGTGCACTGAACCC
AAGTCCGACAGGATATTACGAAGGTAATCAAGCCCGTACCAACCCACAAGCTATTTTGCGCTACCTTGGTCGATTATCTG
GACCACTGTTAGATCGCTTTGATATGTCTTTAGAAATCCCAGCTTTGCCCAAAGGGACATTAGCAGAAGGTGGTGATCGC
GGTGAGCCGACCGCTATCGTTAAAGAACGTGTGAATCATGCGCGTACCAATATGTTGAACCGCAGCGGTAAGGTAAATGC
ACTGTTAGGCAGTCGAGAAATCGAGGCGTTTTGCCCCTTACACAAAAGTGATGCGGAGTTTCTTGAAACCGCTTTGCATC
GTTTGGGGCTTTCGATTCGCGCGTATCATCGCATTATCAAAGTAGCACGAACGATAGCAGATCTTGATGGGGCGGAGCAG
ATTGAACGAGCGCACTTAGCCGAGGCGCTTGGGTATCGAGCGATGGATCGCTTACTGAAACAACTCACGGCGCAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.675

100

0.947
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.51

100

0.649
  comM Legionella pneumophila str. Paris

49.194

97.83

0.481
  comM Legionella pneumophila strain ERS1305867

49.194

97.83

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438

Multiple sequence alignment