Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHFJ9_RS21185 Genome accession   NZ_CP171887
Coordinates   2842681..2843217 (-) Length   178 a.a.
NCBI ID   WP_012841367.1    Uniprot ID   A0AAE4M8V6
Organism   Vibrio sp. D3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2837681..2848217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS21165 (ACHFJ9_21165) - 2838000..2838332 (-) 333 WP_046873588.1 hypothetical protein -
  ACHFJ9_RS21170 (ACHFJ9_21170) gspM 2838325..2838975 (-) 651 WP_104970993.1 type II secretion system protein GspM -
  ACHFJ9_RS21175 (ACHFJ9_21175) - 2838972..2840417 (-) 1446 WP_395356216.1 MSHA biogenesis protein MshI -
  ACHFJ9_RS21180 (ACHFJ9_21180) csrD 2840429..2842438 (-) 2010 WP_375223799.1 RNase E specificity factor CsrD -
  ACHFJ9_RS21185 (ACHFJ9_21185) ssb 2842681..2843217 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  ACHFJ9_RS21190 (ACHFJ9_21190) qstR 2843495..2844139 (+) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACHFJ9_RS21195 (ACHFJ9_21195) galU 2844298..2845170 (+) 873 WP_395356219.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACHFJ9_RS21200 (ACHFJ9_21200) uvrA 2845320..2848142 (+) 2823 WP_053809097.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19791.83 Da        Isoelectric Point: 4.9164

>NTDB_id=1064662 ACHFJ9_RS21185 WP_012841367.1 2842681..2843217(-) (ssb) [Vibrio sp. D3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRGQGGGAPMGGQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1064662 ACHFJ9_RS21185 WP_012841367.1 2842681..2843217(-) (ssb) [Vibrio sp. D3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCGAACGG
CGGTGCAGTAGCTAACATTACTATTGCGACTTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACGG
AATGGCACCGTGTTGTGTTGTTCGGCAAACTTGCGGAAGTAGCAGGTGAGTACTTGCGTAAAGGTTCTCAAGTATACATT
GAAGGCCAACTGCAAACTCGTAAATGGCAAGACCAAAGCGGTCAAGATCGCTACTCAACTGAAGTCGTTGTTCAAGGCTT
CAACGGCGTGATGCAAATGCTTGGCGGTCGTGGTCAAGGTGGCGGCGCACCAATGGGCGGTCAACAGCAGCAGCAAGGTG
GATGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAATGCGCCTCAGCAACAGCAACAACAGCAGGCTCCGCAGCAA
CCACAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.67

100

0.815
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.601
  ssb Neisseria meningitidis MC58

46.927

100

0.472
  ssb Neisseria gonorrhoeae MS11

43.85

100

0.461

Multiple sequence alignment