Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   ACHFJ9_RS21190 Genome accession   NZ_CP171887
Coordinates   2843495..2844139 (+) Length   214 a.a.
NCBI ID   WP_005397417.1    Uniprot ID   A0AAQ2J3W0
Organism   Vibrio sp. D3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2838495..2849139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFJ9_RS21175 (ACHFJ9_21175) - 2838972..2840417 (-) 1446 WP_395356216.1 MSHA biogenesis protein MshI -
  ACHFJ9_RS21180 (ACHFJ9_21180) csrD 2840429..2842438 (-) 2010 WP_375223799.1 RNase E specificity factor CsrD -
  ACHFJ9_RS21185 (ACHFJ9_21185) ssb 2842681..2843217 (-) 537 WP_012841367.1 single-stranded DNA-binding protein Machinery gene
  ACHFJ9_RS21190 (ACHFJ9_21190) qstR 2843495..2844139 (+) 645 WP_005397417.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACHFJ9_RS21195 (ACHFJ9_21195) galU 2844298..2845170 (+) 873 WP_395356219.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACHFJ9_RS21200 (ACHFJ9_21200) uvrA 2845320..2848142 (+) 2823 WP_053809097.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24483.41 Da        Isoelectric Point: 9.7165

>NTDB_id=1064663 ACHFJ9_RS21190 WP_005397417.1 2843495..2844139(+) (qstR) [Vibrio sp. D3]
MRKSAYARKLFLISMEDNAQKKVAALEKYIDMSIPVISTEALMEAKPQHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLSFGQLKGLFYSEDTLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1064663 ACHFJ9_RS21190 WP_005397417.1 2843495..2844139(+) (qstR) [Vibrio sp. D3]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATCAGTATGGAAGATAATGCGCAAAAAAAGGTGGCAGCACTCGA
AAAGTACATTGATATGAGCATCCCGGTGATTTCAACCGAAGCACTCATGGAAGCTAAGCCACAGCATCGTAATAAAATCC
TACTGATCGACTTCAGTGAACATAAATCACTCGTTCAATCGATCAAAAACTTACCGCTGGTATGGAAGAACTTTGAAACC
GTTGTGTTCAATGTCCCTAAAAGGCTGACCACGGATGAGCTGCTTTCATTTGGTCAATTAAAGGGGCTGTTCTATTCCGA
AGATACGCTAGAGCAAATTGGAGAAGGATTAAAAGGCATTGTTAACGGTCAAAACTGGCTGCCGCGTAATGTAACCAGTC
AACTTTTACACTATTACCGTAACGTCATTAACACTCATACTGCCCCAGCCACGGTAGACCTAACCATTCGCGAGCTGCAA
GTACTGCGTTGCTTGCAAGCTGGCGCTTCAAACAGCCAAATGGCCGAGGAATTATTTGTCAGTGAATTCACCATCAAATC
GCACTTGTATCAGATATTCAAAAAGCTATCAGTGAAGAATCGCGTTCAGGCAATCGCGTGGGCAGATCAAAACTTAATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

95.794

100

0.958
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.804

100

0.528

Multiple sequence alignment