Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACHGPQ_RS04725 | Genome accession | NZ_CP171856 |
| Coordinates | 1016666..1017187 (+) | Length | 173 a.a. |
| NCBI ID | WP_087451617.1 | Uniprot ID | - |
| Organism | Ralstonia pseudosolanacearum strain NIB_Z_3685 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1011666..1022187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACHGPQ_RS04700 (ACHGPQ_04700) | recX | 1012045..1012524 (+) | 480 | WP_197368867.1 | recombination regulator RecX | - |
| ACHGPQ_RS04705 (ACHGPQ_04705) | - | 1012799..1013425 (+) | 627 | WP_029240215.1 | DUF2889 domain-containing protein | - |
| ACHGPQ_RS04710 (ACHGPQ_04710) | sucC | 1013492..1014658 (+) | 1167 | WP_197368866.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| ACHGPQ_RS04715 (ACHGPQ_04715) | sucD | 1014743..1015624 (+) | 882 | WP_011000514.1 | succinate--CoA ligase subunit alpha | - |
| ACHGPQ_RS04720 (ACHGPQ_04720) | - | 1015774..1016472 (+) | 699 | WP_019717569.1 | TerC family protein | - |
| ACHGPQ_RS04725 (ACHGPQ_04725) | pilA | 1016666..1017187 (+) | 522 | WP_087451617.1 | pilin | Machinery gene |
| ACHGPQ_RS04730 (ACHGPQ_04730) | pilA | 1017454..1017960 (+) | 507 | WP_011000517.1 | pilin | Machinery gene |
| ACHGPQ_RS04735 (ACHGPQ_04735) | - | 1018042..1019775 (+) | 1734 | WP_197368865.1 | PglL family O-oligosaccharyltransferase | - |
| ACHGPQ_RS04740 (ACHGPQ_04740) | moaC | 1020003..1020479 (-) | 477 | WP_011000519.1 | cyclic pyranopterin monophosphate synthase MoaC | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 17858.57 Da Isoelectric Point: 10.0311
>NTDB_id=1064524 ACHGPQ_RS04725 WP_087451617.1 1016666..1017187(+) (pilA) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFANLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
MASKHSRNRRRGQRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSSLSLGSASL
PASKNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTPYSGSSSVFANLQAGSTPPAMVLWVCAAAGKSMPVNTVTQRTT
ATLPPKYAPSECR
Nucleotide
Download Length: 522 bp
>NTDB_id=1064524 ACHGPQ_RS04725 WP_087451617.1 1016666..1017187(+) (pilA) [Ralstonia pseudosolanacearum strain NIB_Z_3685]
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTACTGACCCCATACTCCGGCAGTTCGTCAGTATTTGCCAATTTGCAGGCGGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
ATGGCATCGAAGCACAGCAGGAACAGGCGGCGCGGCCAGCGCGGCTTTACATTGATCGAGTTGATGATCGTGGTGGCGAT
CATCGGGATTTTGGCGGCGCTGGCGATTCCGGCGTATCAGGACTACACGATCCGGTCGCGTGTGGTCGAGGGGCTGGCAC
TGGCAGGGCAAGCCAAGGCGCTGGTGGTTGAAAATGCCGCCAACGCACAGAGTAGCCTGTCACTCGGTTCCGCATCGTTG
CCGGCCAGCAAGAACGTCAGTGCGCTGAATATTGATTCGTCCACCGGCGAAATCGCAGTGGTCTATGCACCCGCTGTTAC
GGAAGCGGGGGCGAATACGTTGGTACTGACCCCATACTCCGGCAGTTCGTCAGTATTTGCCAATTTGCAGGCGGGTTCAA
CGCCGCCGGCAATGGTGCTGTGGGTGTGTGCCGCCGCCGGCAAGTCGATGCCGGTCAATACCGTTACCCAGAGGACGACG
GCTACGTTGCCACCGAAATACGCGCCCTCGGAGTGCCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
51.705 |
100 |
0.526 |
| pilA2 | Legionella pneumophila str. Paris |
44.848 |
95.376 |
0.428 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
44.242 |
95.376 |
0.422 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
36.979 |
100 |
0.41 |
| comP | Acinetobacter baylyi ADP1 |
39.773 |
100 |
0.405 |