Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHEXL_RS12945 Genome accession   NZ_CP171843
Coordinates   2784299..2785831 (+) Length   510 a.a.
NCBI ID   WP_416559810.1    Uniprot ID   -
Organism   Limnohabitans sp. yimb22184     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2779299..2790831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXL_RS12920 (ACHEXL_12920) - 2779677..2780276 (-) 600 WP_416559805.1 PCC domain-containing protein -
  ACHEXL_RS12925 (ACHEXL_12925) - 2780423..2781301 (+) 879 WP_416559806.1 LysR family transcriptional regulator -
  ACHEXL_RS12930 (ACHEXL_12930) - 2781401..2782954 (-) 1554 WP_416559807.1 ammonium transporter -
  ACHEXL_RS12935 (ACHEXL_12935) glnK 2782978..2783316 (-) 339 WP_416559808.1 P-II family nitrogen regulator -
  ACHEXL_RS12940 (ACHEXL_12940) - 2783345..2784100 (-) 756 WP_416559809.1 TorF family putative porin -
  ACHEXL_RS12945 (ACHEXL_12945) comM 2784299..2785831 (+) 1533 WP_416559810.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHEXL_RS12950 (ACHEXL_12950) - 2785925..2787130 (+) 1206 WP_416559811.1 MFS transporter -
  ACHEXL_RS12955 (ACHEXL_12955) - 2787277..2788221 (+) 945 WP_416559812.1 sulfurtransferase -
  ACHEXL_RS12960 (ACHEXL_12960) - 2788238..2789311 (+) 1074 WP_416559813.1 YeeE/YedE thiosulfate transporter family protein -
  ACHEXL_RS12965 (ACHEXL_12965) - 2789322..2789489 (+) 168 WP_416559814.1 hypothetical protein -
  ACHEXL_RS12970 (ACHEXL_12970) - 2789637..2790779 (+) 1143 WP_416559815.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53811.65 Da        Isoelectric Point: 8.1134

>NTDB_id=1064508 ACHEXL_RS12945 WP_416559810.1 2784299..2785831(+) (comM) [Limnohabitans sp. yimb22184]
MSLSLVRSRALVGLQAPPVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNSGLDFPHNKRITVNLAPADLPKDSG
RLDLPIALGILAASGQIDASKLDGYEFAGELSLSGELRPVRGALAMSLVLRQQHVRTRLVLPPGSAEEAALAPDAEVFRA
QHLLDVVQQFLPPSNEPPLEPGEGWVRMAASVPHAPPRYANLADVKGQAGVKRVLEIAAAGGHSLLMVGPPGSGKSMLAQ
RFAGLLPPMSIEDALESAAVASLAGRFDLARWAQRPTGQPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFPRA
ALEALREPLESGTITIARAARRAEFPARFQLIAAMNPCPCGYLGSPTRACRCSPDQVSRYQGKLSGPLLDRIDLHIEVPS
LPAQDLLNAPPGESTEAIAARSLAARERALARQGCANAALQGQAIDTHARLEDSATSLLQKAAAKLGWSGRSTHRSLKVA
RTIADLAGSDTIAAAHVAEAVQYRRVLKEA

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1064508 ACHEXL_RS12945 WP_416559810.1 2784299..2785831(+) (comM) [Limnohabitans sp. yimb22184]
ATGAGTCTCAGTTTGGTGCGTAGCCGCGCTTTGGTCGGCTTGCAGGCGCCGCCCGTCACCGTTGAGGTGCATTTGGCCAA
TGGGTTGCCCAGCTTCACCTTGGTGGGCTTGGCCGATGTCGAGGTCAAGGAAGCCCGCGAACGCGTGCGCTCAGCCTTGC
AAAACAGCGGGCTGGACTTTCCGCACAACAAGCGCATCACCGTCAACCTGGCCCCGGCGGACTTGCCCAAAGACTCCGGG
CGGCTGGACTTGCCGATTGCGCTGGGCATATTGGCCGCCAGCGGACAGATCGACGCCAGCAAGCTGGACGGCTATGAATT
CGCGGGCGAGTTGTCGCTGTCGGGCGAACTGCGCCCGGTGCGCGGCGCACTGGCCATGAGCCTGGTGCTGCGCCAGCAGC
ACGTGCGCACCCGGCTGGTGTTGCCACCGGGCAGCGCCGAAGAAGCCGCCCTCGCACCCGACGCCGAAGTCTTTCGCGCA
CAGCATTTGCTCGACGTGGTGCAGCAGTTTTTACCGCCCTCGAACGAGCCCCCGCTGGAGCCGGGCGAAGGCTGGGTGCG
CATGGCAGCGTCTGTGCCCCATGCACCACCGCGCTACGCCAATCTGGCCGATGTGAAAGGCCAAGCCGGCGTGAAACGGG
TGCTGGAGATCGCCGCCGCCGGGGGCCATTCGCTGCTCATGGTCGGCCCGCCAGGCTCGGGCAAATCCATGCTGGCGCAG
CGTTTTGCGGGTTTGCTGCCGCCCATGTCGATCGAAGACGCGCTGGAGTCGGCGGCGGTGGCCAGCCTGGCCGGGCGCTT
TGATCTGGCCCGCTGGGCGCAACGCCCCACCGGCCAGCCGCACCATTCGGCCAGTGCGGTGGCTTTGGTCGGTGGCGGCT
CGCCACCCCGGCCAGGTGAGATTTCGCTGGCGCACCATGGGGTGCTGTTTCTGGATGAGCTTCCAGAGTTTCCACGAGCC
GCTTTGGAAGCCCTGCGCGAACCGCTGGAAAGCGGCACCATCACCATCGCCCGGGCAGCGCGGCGGGCCGAGTTTCCAGC
GCGTTTTCAGTTGATCGCCGCCATGAATCCCTGCCCCTGCGGCTATTTGGGCAGCCCCACGCGGGCCTGCCGCTGCTCAC
CCGACCAGGTCAGCCGCTACCAAGGCAAGCTCAGTGGCCCACTGCTCGACCGGATCGATTTGCACATCGAAGTGCCCAGC
CTGCCCGCTCAAGACCTGCTGAATGCACCGCCCGGTGAAAGCACCGAAGCGATCGCTGCCCGCAGCCTGGCCGCCCGTGA
ACGGGCCCTGGCCCGCCAGGGCTGCGCCAACGCGGCATTGCAAGGCCAGGCCATCGACACCCATGCACGCTTGGAAGACA
GCGCCACCAGTTTGCTGCAAAAGGCTGCCGCCAAGCTTGGCTGGAGCGGGCGCAGCACCCACCGCAGCCTGAAAGTGGCC
CGCACCATCGCCGACCTGGCCGGCAGTGACACCATTGCCGCCGCGCACGTGGCCGAAGCGGTGCAGTACCGGCGGGTGCT
CAAGGAAGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(202-405)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.418

100

0.531
  comM Haemophilus influenzae Rd KW20

51.859

100

0.52
  comM Vibrio campbellii strain DS40M4

50.482

100

0.514
  comM Glaesserella parasuis strain SC1401

51.081

99.804

0.51
  comM Legionella pneumophila str. Paris

47.592

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.592

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.898

99.608

0.437

Multiple sequence alignment