Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHEXK_RS14430 Genome accession   NZ_CP171842
Coordinates   3139170..3140702 (+) Length   510 a.a.
NCBI ID   WP_416546976.1    Uniprot ID   -
Organism   Limnohabitans sp. DCL3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3134170..3145702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXK_RS14405 (ACHEXK_14400) - 3134426..3135367 (-) 942 WP_416546972.1 SMP-30/gluconolactonase/LRE family protein -
  ACHEXK_RS14410 (ACHEXK_14405) - 3135428..3136237 (-) 810 WP_416546973.1 SDR family NAD(P)-dependent oxidoreductase -
  ACHEXK_RS14415 (ACHEXK_14410) - 3136362..3137894 (-) 1533 WP_416546974.1 ammonium transporter -
  ACHEXK_RS14420 (ACHEXK_14415) glnK 3137920..3138258 (-) 339 WP_100118295.1 P-II family nitrogen regulator -
  ACHEXK_RS14425 (ACHEXK_14420) - 3138292..3138972 (-) 681 WP_416546975.1 TorF family putative porin -
  ACHEXK_RS14430 (ACHEXK_14425) comM 3139170..3140702 (+) 1533 WP_416546976.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHEXK_RS14435 (ACHEXK_14430) - 3140753..3141583 (-) 831 WP_416546977.1 amidohydrolase family protein -
  ACHEXK_RS14440 (ACHEXK_14435) - 3141580..3142617 (-) 1038 WP_416546978.1 aldo/keto reductase -
  ACHEXK_RS14445 (ACHEXK_14440) - 3142751..3143191 (+) 441 WP_416546979.1 RbsD/FucU family protein -
  ACHEXK_RS14450 (ACHEXK_14445) - 3143196..3143960 (+) 765 WP_416546980.1 GntR family transcriptional regulator -
  ACHEXK_RS14455 (ACHEXK_14450) - 3143957..3144889 (+) 933 WP_416546981.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 53880.83 Da        Isoelectric Point: 8.5204

>NTDB_id=1064495 ACHEXK_RS14430 WP_416546976.1 3139170..3140702(+) (comM) [Limnohabitans sp. DCL3]
MSLSLVHSRALIGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALQNSGLEFPHNKRITVNLAPADLPKDSG
RLDLPIALGILAASGQIDASKLAGHEFAGELSLSGELRPVRGALAMSLVLRQQQVRTRLVLPPGSAEEAALVPDAQVFRA
QHLLDVVQQFLPPSSEPPPEPSGGWARMATTTPSAPTRYADLADVKGHAAAKRVLEIAAAGGHSLLMVGPPGSGKSMLAQ
RFAGLLPPMGMEEALESAAIASLAGRFELRHWAQRPTGQPHHSASAVALVGGGSPPRPGEISLAHHGVLFLDELPEFPRA
ALEALREPLETGTITIARAARRAEFPARFQLIAAMNPCPCGYLGSSIRACRCSPDQVNRYQSRLSGPLLDRIDLHIEVPS
LPANDLLGAPAGECTQAIAVRSLAARQRALDRQGCVNSALHGQAIDAQAQLDEKATVLLQKAAAKLGWSGRSIHRSLKVA
RTIADLAGSASTEAAHVAEAVQYRRVLKET

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=1064495 ACHEXK_RS14430 WP_416546976.1 3139170..3140702(+) (comM) [Limnohabitans sp. DCL3]
ATGAGTCTCAGTTTGGTGCACAGCCGGGCCTTGATTGGCCTGCAAGCGCCCGCGGTCACCGTAGAGGTGCATTTGGCCAA
CGGCTTGCCCAGCTTCACTTTGGTGGGCTTGGCGGACGTGGAAGTCAAAGAAGCGCGCGAACGGGTGCGCTCCGCCCTGC
AAAACAGCGGACTGGAGTTTCCACACAACAAACGCATCACGGTCAACCTGGCCCCGGCCGATTTGCCCAAAGACTCTGGA
CGGCTGGATTTGCCCATTGCACTGGGCATTTTGGCCGCCAGCGGGCAAATCGATGCCAGCAAACTGGCTGGCCATGAGTT
TGCGGGCGAGTTGTCGCTTTCGGGCGAGTTGCGACCGGTGCGCGGTGCACTGGCCATGAGCCTGGTGCTGCGTCAGCAGC
AAGTGCGCACGCGCTTGGTGCTGCCCCCTGGCAGTGCCGAAGAGGCGGCGCTGGTGCCCGATGCCCAAGTGTTCAGGGCC
CAGCACTTGCTGGATGTGGTGCAACAATTTTTGCCCCCCTCCAGCGAGCCGCCCCCTGAGCCCAGTGGGGGCTGGGCGCG
CATGGCCACCACCACCCCCAGCGCCCCGACGCGCTATGCTGATTTGGCCGATGTGAAAGGCCATGCGGCTGCCAAGCGTG
TGCTGGAGATCGCTGCGGCTGGCGGCCACTCGCTGCTCATGGTGGGCCCACCGGGTTCGGGCAAGTCCATGTTGGCGCAA
CGCTTTGCGGGTCTGCTGCCGCCCATGGGCATGGAGGAGGCCCTCGAGTCGGCGGCCATTGCCAGTTTGGCCGGTCGCTT
TGAGCTGAGGCACTGGGCACAGCGGCCCACGGGCCAGCCGCACCACTCGGCCAGTGCCGTGGCCCTGGTCGGTGGGGGCT
CACCGCCCAGGCCGGGTGAAATCTCTCTCGCGCACCACGGGGTTTTGTTTCTGGACGAGTTGCCCGAATTTCCGCGTGCC
GCACTGGAGGCCCTGCGCGAGCCACTGGAAACCGGCACCATCACCATCGCGCGCGCAGCGCGCCGGGCCGAGTTTCCAGC
GCGCTTTCAGTTGATTGCGGCCATGAACCCCTGCCCATGCGGGTATTTGGGCAGCAGCATCCGGGCCTGCCGTTGTTCGC
CCGACCAAGTCAACCGCTACCAAAGCAGACTCAGCGGACCTTTGCTGGACCGGATCGATTTGCACATCGAGGTGCCCAGC
CTGCCCGCCAATGACCTGCTGGGTGCGCCAGCTGGCGAATGCACACAGGCCATCGCTGTCCGAAGCCTGGCGGCACGCCA
GCGTGCCTTGGACCGCCAGGGCTGCGTCAACTCAGCGCTGCACGGCCAAGCCATCGATGCACAGGCGCAACTGGACGAGA
AGGCCACGGTCCTGCTGCAAAAAGCCGCCGCCAAACTCGGCTGGAGCGGCCGCAGCATCCACCGCAGCCTGAAAGTGGCC
CGCACCATCGCCGACCTGGCGGGCAGCGCAAGCACAGAGGCCGCACATGTGGCCGAAGCGGTTCAGTATCGGCGTGTGCT
CAAGGAGACATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-404)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(413-504)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.938

100

0.525
  comM Haemophilus influenzae Rd KW20

50.969

100

0.516
  comM Vibrio campbellii strain DS40M4

50.484

100

0.512
  comM Glaesserella parasuis strain SC1401

50.984

99.608

0.508
  comM Legionella pneumophila str. Paris

47.461

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.461

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.97

99.02

0.425

Multiple sequence alignment