Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHEXK_RS00345 Genome accession   NZ_CP171842
Coordinates   64789..65289 (+) Length   166 a.a.
NCBI ID   WP_416547288.1    Uniprot ID   -
Organism   Limnohabitans sp. DCL3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 59789..70289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXK_RS00330 (ACHEXK_00330) - 59977..60375 (-) 399 WP_416547285.1 glutaredoxin family protein -
  ACHEXK_RS00335 (ACHEXK_00335) uvrA 60429..63332 (-) 2904 WP_416547286.1 excinuclease ABC subunit UvrA -
  ACHEXK_RS00340 (ACHEXK_00340) - 63521..64708 (+) 1188 WP_416547287.1 MFS transporter -
  ACHEXK_RS00345 (ACHEXK_00345) ssb 64789..65289 (+) 501 WP_416547288.1 single-stranded DNA-binding protein Machinery gene
  ACHEXK_RS00350 (ACHEXK_00350) - 65374..66702 (+) 1329 WP_416547289.1 DUF3422 family protein -
  ACHEXK_RS00355 (ACHEXK_00355) - 66800..67555 (+) 756 WP_416547290.1 SDR family NAD(P)-dependent oxidoreductase -
  ACHEXK_RS00360 (ACHEXK_00360) - 67574..68488 (-) 915 WP_416547291.1 LysR family transcriptional regulator -
  ACHEXK_RS00365 (ACHEXK_00365) - 68586..69545 (+) 960 WP_416547292.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17834.89 Da        Isoelectric Point: 7.0162

>NTDB_id=1064485 ACHEXK_RS00345 WP_416547288.1 64789..65289(+) (ssb) [Limnohabitans sp. DCL3]
MASVNKVIIVGNLGADPETRYLPSGDAVTSIRVATTDRYKDKQTGEMKEATEWHSISFFAKLAEIAGQYLRKGSQVYVEG
SLRTRKYTDKNGVEKYATDIRADSMQMLGSRQGMGGPSEESGASAGGYAPRQAPARPQAAPAQRPAAAAPRPAASSFDEM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1064485 ACHEXK_RS00345 WP_416547288.1 64789..65289(+) (ssb) [Limnohabitans sp. DCL3]
ATGGCATCCGTCAACAAAGTCATCATCGTCGGCAATTTGGGTGCCGACCCCGAAACCCGTTATTTGCCATCAGGCGATGC
GGTCACCAGCATCCGCGTGGCCACCACCGACCGCTACAAAGACAAACAGACCGGCGAGATGAAAGAAGCCACCGAGTGGC
ACAGCATCAGCTTTTTTGCCAAGTTGGCCGAAATCGCCGGTCAATACCTGCGCAAAGGCAGTCAGGTGTATGTGGAGGGC
AGCCTGCGCACCCGCAAATACACCGACAAAAATGGCGTGGAAAAATATGCCACCGACATCCGTGCCGACAGCATGCAAAT
GCTGGGCAGTCGACAAGGCATGGGGGGGCCTTCTGAGGAAAGCGGCGCCAGCGCGGGTGGCTATGCCCCACGCCAAGCCC
CTGCACGCCCTCAGGCTGCCCCCGCACAGCGCCCGGCGGCGGCAGCGCCCAGGCCTGCGGCGAGCAGCTTTGACGAGATG
GACGATGACATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.572
  ssb Neisseria meningitidis MC58

48.333

100

0.524
  ssb Vibrio cholerae strain A1552

48.603

100

0.524
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.518

Multiple sequence alignment