Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACHFCC_RS01050 Genome accession   NZ_CP171806
Coordinates   221621..223144 (-) Length   507 a.a.
NCBI ID   WP_395140142.1    Uniprot ID   -
Organism   Schlegelella aquatica strain HS-12-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 216621..228144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFCC_RS01040 (ACHFCC_01040) - 216698..219841 (+) 3144 WP_126624755.1 efflux RND transporter permease subunit -
  ACHFCC_RS01045 (ACHFCC_01045) - 219838..221286 (+) 1449 WP_395140140.1 efflux transporter outer membrane subunit -
  ACHFCC_RS01050 (ACHFCC_01050) comM 221621..223144 (-) 1524 WP_395140142.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACHFCC_RS01055 (ACHFCC_01055) - 223404..224174 (+) 771 WP_395140144.1 TorF family putative porin -
  ACHFCC_RS01060 (ACHFCC_01060) glnK 224203..224541 (+) 339 WP_395140146.1 P-II family nitrogen regulator -
  ACHFCC_RS01065 (ACHFCC_01065) amt 224598..226127 (+) 1530 WP_264892980.1 ammonium transporter -
  ACHFCC_RS01070 (ACHFCC_01070) gshA 226400..227695 (+) 1296 WP_395140148.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54082.11 Da        Isoelectric Point: 7.8230

>NTDB_id=1064282 ACHFCC_RS01050 WP_395140142.1 221621..223144(-) (comM) [Schlegelella aquatica strain HS-12-14]
MSLAVIHSRALAALQAPPVTVEVHLANGLPAFTLVGLADTEVKESRERVRAALLNSGLEFPHNKRITVNLAPADLPKESG
RFDLPIALGILAASGQLDAERLAPFEFAGELSLAGDLRPVRGALAMSVALRRQGCERAMVLPLDSAREASLVPDAQVYGA
RHLLDVVASLHPERAACAEAGWVRVQHELAVAEPVHPDLRDVKGQNAAKRAMEVAAAGGHSLLFVGPPGTGKSMLAHRFA
GLLPALEVDEALESAAVLSLAGHFEPRRWRQRVLRCPHHSASSVALVGGSVPPRPGEISLAHHGVLFLDELPEFPRPALE
ALREPLETGQITISRASQRAEFPARFQLVAAMNPCPCGHLGSRLQACRCTPDAVARYQAKLSGPLLDRIDLQVEVTAVPP
EELLHAPPGEPSAAVAERVARARERQLARQGQLNAHLAGAQLDVHLRPDEAAGRFLESAAKKLGWSSRSLHRVLKVARTV
ADLAGSEAISTSHVAEAVQLRRAIASN

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1064282 ACHFCC_RS01050 WP_395140142.1 221621..223144(-) (comM) [Schlegelella aquatica strain HS-12-14]
ATGTCTCTTGCCGTCATCCACAGCCGCGCGCTGGCCGCGCTGCAGGCACCGCCCGTCACCGTCGAGGTGCACCTCGCCAA
CGGCCTGCCGGCCTTCACGCTGGTGGGCCTGGCGGACACCGAGGTCAAGGAATCGCGCGAGCGCGTGCGCGCGGCCCTGC
TGAACAGCGGGCTGGAGTTCCCCCACAACAAGCGCATCACGGTCAACCTGGCGCCGGCCGATCTGCCGAAGGAATCGGGC
CGCTTCGACCTGCCGATCGCGCTGGGCATCCTGGCGGCCAGCGGGCAGCTCGACGCCGAGCGGCTGGCGCCGTTCGAGTT
CGCGGGGGAACTGTCGCTGGCCGGAGACCTGCGCCCGGTGCGCGGGGCCTTGGCGATGAGCGTCGCGCTGCGGCGCCAGG
GCTGTGAACGCGCGATGGTGCTGCCGCTGGACAGCGCCCGCGAGGCCTCGCTCGTGCCGGACGCCCAGGTCTACGGCGCG
CGGCACCTGCTCGACGTGGTCGCTTCGCTGCATCCCGAGCGTGCTGCCTGCGCAGAAGCGGGCTGGGTGCGCGTGCAGCA
CGAACTGGCCGTGGCCGAGCCCGTGCACCCCGACCTGCGCGACGTGAAGGGCCAAAATGCCGCCAAGCGGGCGATGGAGG
TCGCCGCGGCCGGGGGGCACTCGCTGCTGTTCGTCGGCCCGCCCGGCACGGGCAAGTCGATGCTGGCGCATCGCTTCGCT
GGTCTGCTGCCGGCGCTGGAGGTGGACGAGGCCCTGGAATCGGCCGCGGTGCTGAGCCTGGCCGGCCACTTCGAGCCCCG
GCGCTGGCGCCAGCGCGTGCTGCGCTGCCCGCACCACAGTGCCTCGTCGGTGGCGCTGGTGGGTGGCAGCGTGCCGCCAC
GCCCCGGCGAGATCTCCCTCGCCCACCACGGCGTGCTGTTCCTCGACGAGCTGCCGGAGTTCCCGCGGCCTGCCCTGGAG
GCCTTGCGTGAGCCGCTGGAGACGGGGCAGATCACCATCTCGAGGGCGTCGCAGCGCGCGGAGTTCCCGGCCCGCTTCCA
GCTCGTCGCAGCGATGAATCCCTGCCCTTGCGGGCATCTCGGCTCGCGGTTGCAGGCGTGCCGATGCACGCCGGATGCGG
TCGCACGCTATCAGGCCAAGCTGAGCGGACCGCTGCTGGATCGCATCGACCTGCAGGTGGAAGTGACGGCCGTGCCGCCC
GAGGAGCTGCTCCACGCGCCGCCGGGCGAGCCGAGCGCCGCCGTGGCCGAGCGGGTGGCCCGGGCGCGAGAACGCCAGCT
CGCCCGCCAGGGGCAGCTCAACGCGCACCTCGCGGGGGCGCAGCTCGATGTGCACCTGCGGCCGGACGAGGCGGCAGGCC
GCTTCCTGGAGTCCGCCGCGAAGAAGCTGGGGTGGTCTTCACGCAGCCTGCACCGGGTGCTCAAGGTCGCCCGCACGGTG
GCCGATCTGGCGGGCAGCGAGGCCATCAGCACGTCGCATGTGGCCGAGGCCGTCCAATTGCGGCGCGCGATCGCCTCGAA
CTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-402)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(409-501)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.881

99.606

0.517
  comM Haemophilus influenzae Rd KW20

51.69

99.211

0.513
  comM Vibrio campbellii strain DS40M4

50.294

100

0.507
  comM Glaesserella parasuis strain SC1401

50.198

99.803

0.501
  comM Legionella pneumophila str. Paris

48.062

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.062

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.59

100

0.436

Multiple sequence alignment