Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACHFCC_RS00750 Genome accession   NZ_CP171806
Coordinates   152270..152770 (+) Length   166 a.a.
NCBI ID   WP_395140040.1    Uniprot ID   -
Organism   Schlegelella aquatica strain HS-12-14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 147270..157770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHFCC_RS00730 (ACHFCC_00730) - 147922..148212 (-) 291 WP_395140032.1 hypothetical protein -
  ACHFCC_RS00735 (ACHFCC_00735) - 148401..148781 (+) 381 WP_395140034.1 hypothetical protein -
  ACHFCC_RS00740 (ACHFCC_00740) - 148783..150762 (-) 1980 WP_395140036.1 RecQ family ATP-dependent DNA helicase -
  ACHFCC_RS00745 (ACHFCC_00745) - 150939..152159 (+) 1221 WP_395140038.1 MFS transporter -
  ACHFCC_RS00750 (ACHFCC_00750) ssb 152270..152770 (+) 501 WP_395140040.1 single-stranded DNA-binding protein Machinery gene
  ACHFCC_RS00755 (ACHFCC_00755) - 152886..153857 (+) 972 WP_395140042.1 glucokinase -
  ACHFCC_RS00760 (ACHFCC_00760) mnmA 153950..155053 (-) 1104 WP_395140044.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACHFCC_RS00765 (ACHFCC_00765) - 155050..155541 (-) 492 WP_264892914.1 NUDIX hydrolase -
  ACHFCC_RS00770 (ACHFCC_00770) - 155727..156842 (+) 1116 WP_395140047.1 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha -
  ACHFCC_RS00775 (ACHFCC_00775) panD 156839..157201 (+) 363 WP_395140049.1 aspartate 1-decarboxylase -
  ACHFCC_RS00780 (ACHFCC_00780) - 157308..157619 (+) 312 WP_395140051.1 NAD(P) transhydrogenase subunit alpha -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18221.20 Da        Isoelectric Point: 5.4012

>NTDB_id=1064280 ACHFCC_RS00750 WP_395140040.1 152270..152770(+) (ssb) [Schlegelella aquatica strain HS-12-14]
MASVNKVILIGNLGRDPEVRYTPNGSAVCNISLATTRNWKNRDTGERQEETEWHRVVFYDRLAEIAGEYLKKGRSVYVEG
RLKTRKWQDKEGAEKYTTEIIAEQMQLLGSREGMGGGAAGDEGGYSREPYEGGAAGRSAPAASRPASKPAPKSSTGFDDM
DDDIPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=1064280 ACHFCC_RS00750 WP_395140040.1 152270..152770(+) (ssb) [Schlegelella aquatica strain HS-12-14]
ATGGCCTCTGTCAACAAAGTCATCCTGATCGGCAACCTCGGGCGCGACCCCGAGGTGCGCTACACGCCCAACGGTTCGGC
CGTCTGCAACATCTCGTTGGCCACCACTCGCAACTGGAAGAACCGCGACACCGGCGAGCGTCAGGAGGAAACCGAGTGGC
ACCGCGTGGTGTTCTACGACCGCCTGGCCGAGATCGCCGGGGAGTATCTGAAGAAAGGCCGCTCGGTGTACGTCGAGGGG
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGAAGGCGCCGAGAAGTACACAACCGAGATCATCGCCGAGCAGATGCAACT
GCTGGGCAGCCGCGAGGGCATGGGTGGCGGTGCGGCGGGTGATGAAGGCGGCTACAGCCGCGAGCCCTACGAGGGCGGCG
CTGCGGGCCGCAGCGCCCCGGCGGCCTCGCGCCCGGCCAGCAAGCCCGCGCCCAAGTCGTCGACCGGCTTCGACGACATG
GACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.189

100

0.548
  ssb Vibrio cholerae strain A1552

49.721

100

0.536
  ssb Neisseria gonorrhoeae MS11

50.286

100

0.53
  ssb Neisseria meningitidis MC58

49.714

100

0.524
  ssbA Bacillus subtilis subsp. subtilis str. 168

34.483

100

0.361

Multiple sequence alignment