Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGP04_RS11355 Genome accession   NZ_CP171655
Coordinates   2253048..2254370 (-) Length   440 a.a.
NCBI ID   WP_395168074.1    Uniprot ID   -
Organism   Piscirickettsia salmonis strain W24_02013     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2234954..2279810 2253048..2254370 within 0


Gene organization within MGE regions


Location: 2234954..2279810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGP04_RS11265 (ACGP04_12970) - 2234954..2235928 (+) 975 WP_395167831.1 IS30 family transposase -
  ACGP04_RS11270 (ACGP04_12975) asnS 2236071..2237462 (-) 1392 WP_395168068.1 asparagine--tRNA ligase -
  ACGP04_RS11275 (ACGP04_12980) trbB 2237588..2238535 (-) 948 WP_122942645.1 P-type conjugative transfer ATPase TrbB -
  ACGP04_RS11280 (ACGP04_12985) - 2238532..2239047 (-) 516 WP_122942647.1 S26 family signal peptidase -
  ACGP04_RS11285 (ACGP04_12990) - 2239502..2240233 (-) 732 Protein_2212 type IV secretion system protein -
  ACGP04_RS11290 (ACGP04_12995) - 2240230..2240538 (-) 309 WP_395168069.1 hypothetical protein -
  ACGP04_RS11295 (ACGP04_13000) - 2240555..2241787 (-) 1233 WP_395168070.1 TrbI/VirB10 family protein -
  ACGP04_RS11300 (ACGP04_13005) - 2241784..2242827 (-) 1044 WP_122941949.1 TrbG/VirB9 family P-type conjugative transfer protein -
  ACGP04_RS11305 (ACGP04_13010) trbF 2242827..2243510 (-) 684 WP_122941951.1 conjugal transfer protein TrbF -
  ACGP04_RS11310 (ACGP04_13015) trbE 2243503..2245995 (-) 2493 WP_395168071.1 conjugal transfer protein TrbE -
  ACGP04_RS11315 (ACGP04_13020) - 2246012..2246266 (-) 255 WP_017377396.1 VirB3 family type IV secretion system protein -
  ACGP04_RS11320 (ACGP04_13025) - 2246267..2246560 (-) 294 WP_051307316.1 TrbC/VirB2 family protein -
  ACGP04_RS11325 (ACGP04_13030) - 2246987..2247241 (+) 255 WP_122941957.1 hypothetical protein -
  ACGP04_RS11330 (ACGP04_13035) - 2247397..2247603 (+) 207 WP_395168072.1 hypothetical protein -
  ACGP04_RS11335 (ACGP04_13040) - 2247650..2248378 (+) 729 WP_395167848.1 IS6 family transposase -
  ACGP04_RS11340 (ACGP04_13045) - 2248612..2249160 (+) 549 WP_415926360.1 efflux RND transporter periplasmic adaptor subunit -
  ACGP04_RS11345 (ACGP04_13050) - 2249180..2252287 (+) 3108 WP_395168073.1 efflux RND transporter permease subunit -
  ACGP04_RS11350 (ACGP04_13055) - 2252610..2252816 (-) 207 WP_395168703.1 hypothetical protein -
  ACGP04_RS11355 (ACGP04_13060) comM 2253048..2254370 (-) 1323 WP_395168074.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACGP04_RS11360 (ACGP04_13065) ubiK 2254398..2254679 (-) 282 WP_016209714.1 ubiquinone biosynthesis accessory factor UbiK -
  ACGP04_RS11365 (ACGP04_13070) - 2254828..2255169 (+) 342 WP_016209709.1 P-II family nitrogen regulator -
  ACGP04_RS11370 (ACGP04_13075) speA 2255289..2257169 (+) 1881 WP_122940898.1 biosynthetic arginine decarboxylase -
  ACGP04_RS11375 (ACGP04_13080) - 2257254..2258852 (-) 1599 WP_395168075.1 hypothetical protein -
  ACGP04_RS11380 (ACGP04_13085) - 2258870..2259985 (-) 1116 WP_122940903.1 glycosyltransferase -
  ACGP04_RS11385 (ACGP04_13090) aroF 2260113..2261111 (-) 999 WP_122940905.1 3-deoxy-7-phosphoheptulonate synthase -
  ACGP04_RS11390 (ACGP04_13095) trpA 2261115..2261882 (-) 768 WP_122940907.1 tryptophan synthase subunit alpha -
  ACGP04_RS11395 (ACGP04_13100) trpB 2261875..2263074 (-) 1200 WP_122940909.1 tryptophan synthase subunit beta -
  ACGP04_RS11400 (ACGP04_13105) - 2263058..2263729 (-) 672 WP_395168076.1 phosphoribosylanthranilate isomerase -
  ACGP04_RS11405 (ACGP04_13110) - 2263751..2264527 (-) 777 WP_122940913.1 indole-3-glycerol phosphate synthase TrpC -
  ACGP04_RS11410 (ACGP04_13115) trpD 2264531..2265529 (-) 999 WP_122940915.1 anthranilate phosphoribosyltransferase -
  ACGP04_RS11415 (ACGP04_13120) - 2265531..2266109 (-) 579 WP_016209697.1 anthranilate synthase component II -
  ACGP04_RS11420 (ACGP04_13125) - 2266106..2267575 (-) 1470 WP_122940917.1 anthranilate synthase component I family protein -
  ACGP04_RS11425 (ACGP04_13130) trpR 2267619..2267906 (-) 288 WP_016209719.1 trp operon repressor -
  ACGP04_RS11430 (ACGP04_13135) - 2268107..2268868 (+) 762 WP_122940918.1 DMT family transporter -
  ACGP04_RS11435 (ACGP04_13140) - 2268904..2269053 (+) 150 WP_395168077.1 transposase -
  ACGP04_RS11440 (ACGP04_13145) - 2269043..2269165 (+) 123 WP_257787223.1 hypothetical protein -
  ACGP04_RS11445 (ACGP04_13150) - 2269324..2269473 (+) 150 WP_395168078.1 hypothetical protein -
  ACGP04_RS11450 (ACGP04_15400) - 2269491..2270117 (+) 627 WP_415926261.1 IS3 family transposase -
  ACGP04_RS11455 (ACGP04_13160) - 2270262..2270594 (+) 333 WP_395168079.1 transposase -
  ACGP04_RS11460 (ACGP04_13165) - 2270608..2270817 (+) 210 WP_415926262.1 EamA family transporter -
  ACGP04_RS11465 (ACGP04_13170) - 2270930..2271484 (+) 555 WP_122942561.1 hypothetical protein -
  ACGP04_RS11470 (ACGP04_13175) - 2271600..2271773 (+) 174 WP_395168080.1 hypothetical protein -
  ACGP04_RS11475 (ACGP04_13180) - 2271943..2272482 (+) 540 WP_036776841.1 peroxiredoxin -
  ACGP04_RS11480 (ACGP04_13185) - 2272567..2273103 (+) 537 WP_032126699.1 carboxymuconolactone decarboxylase family protein -
  ACGP04_RS11485 (ACGP04_13190) - 2273755..2274057 (-) 303 WP_016211866.1 hypothetical protein -
  ACGP04_RS11490 (ACGP04_13195) - 2274507..2275034 (+) 528 WP_395168081.1 hypothetical protein -
  ACGP04_RS11495 (ACGP04_13200) - 2275003..2275146 (+) 144 WP_395168082.1 hypothetical protein -
  ACGP04_RS11500 (ACGP04_13205) - 2275380..2275772 (+) 393 WP_122943332.1 hypothetical protein -
  ACGP04_RS11505 (ACGP04_13210) - 2276094..2277113 (-) 1020 WP_395168705.1 transposase -
  ACGP04_RS11510 (ACGP04_13215) - 2277503..2278489 (+) 987 WP_395168083.1 IS4 family transposase -
  ACGP04_RS11515 (ACGP04_13220) - 2278548..2279189 (+) 642 WP_395168084.1 IS30 family transposase -
  ACGP04_RS11520 (ACGP04_13225) - 2279334..2279810 (+) 477 WP_395168085.1 IS30 family transposase -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 47496.56 Da        Isoelectric Point: 7.9263

>NTDB_id=1062511 ACGP04_RS11355 WP_395168074.1 2253048..2254370(-) (comM) [Piscirickettsia salmonis strain W24_02013]
MKLAIVYSRAQVAVAAPQVTVEVHISNGLPGFTIVGLPDAAVKESRERVRSAIQNSGFNFPQRRITVNLAPADLPKDGGR
FDLAIAIGILASSGQINADILNGYEFIGELALSGEVRSVTGALTSAKAVKECQRKLIIADDNANLAALVEGLSVYRANNL
ASISAFLKGEGDLEQAYFQVDTGQTHYLDMADVKGQAHAKRALEIAAAGRHHLLFVGPPGTGKTMLASRLPGVLPALSNQ
EALESAAVHSLTSAEIDLSCWFIPKFASPHHTASSIAMVGGGSVPKPGEISRAHHGVLFLDELPEFDRKVLEVLREPLES
GQVDIIRASHRASFPASFQLIAAMNPCPCGHLGSQEQRCRCSQLQIKRYLNKLSGPLLERIDLQIEVPRLLQHELSSTQV
AESSVVIRQRVEVARQLQLKRQQCPNAGLMPRQTLRAMEC

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1062511 ACGP04_RS11355 WP_395168074.1 2253048..2254370(-) (comM) [Piscirickettsia salmonis strain W24_02013]
ATGAAATTAGCAATTGTTTACTCGCGTGCCCAGGTTGCGGTGGCTGCGCCACAAGTGACTGTTGAGGTGCATATTTCTAA
TGGCTTACCAGGCTTTACCATCGTAGGATTGCCGGATGCGGCGGTAAAAGAAAGCCGTGAGCGCGTGCGCAGCGCGATTC
AAAACTCTGGCTTTAATTTCCCACAACGGCGTATTACTGTGAACCTTGCGCCTGCAGACTTACCGAAAGATGGTGGGCGC
TTTGATTTAGCGATTGCCATCGGCATTTTGGCATCGTCGGGCCAAATTAATGCCGATATTTTAAACGGCTATGAATTTAT
TGGTGAACTTGCCCTCTCTGGTGAAGTACGTTCTGTCACTGGCGCCTTAACGAGTGCTAAAGCGGTTAAAGAATGTCAGC
GTAAATTAATCATCGCTGATGATAATGCCAATTTAGCGGCCTTAGTCGAGGGGTTATCTGTATATCGGGCGAATAATTTA
GCTAGCATTAGTGCTTTTTTAAAAGGCGAAGGCGATTTAGAACAGGCCTATTTTCAAGTCGATACCGGGCAAACGCACTA
TTTAGATATGGCGGATGTCAAAGGTCAGGCGCATGCTAAGCGCGCTTTAGAAATTGCCGCGGCAGGTCGTCATCATTTAC
TTTTTGTCGGCCCTCCGGGAACAGGCAAAACCATGCTTGCCTCACGTTTACCTGGTGTTTTGCCAGCCTTATCCAATCAA
GAAGCACTAGAATCAGCAGCAGTGCATAGTTTAACGAGTGCTGAAATTGATTTATCATGTTGGTTTATCCCTAAGTTTGC
CAGTCCTCATCATACCGCATCGAGTATTGCCATGGTTGGGGGTGGCTCAGTGCCAAAACCGGGTGAAATTTCTCGGGCGC
ATCATGGGGTATTATTTTTAGATGAGTTGCCTGAATTTGACCGCAAAGTCTTAGAAGTATTACGAGAGCCATTAGAATCG
GGTCAGGTTGATATTATTCGCGCAAGTCACCGGGCGTCTTTTCCGGCTTCGTTTCAGCTTATTGCAGCAATGAACCCGTG
TCCCTGTGGCCATTTAGGTTCACAAGAGCAACGTTGTCGTTGCAGTCAGTTACAGATCAAGCGCTATTTAAATAAGCTCT
CTGGACCGTTACTTGAGCGTATTGACCTGCAAATTGAAGTACCACGGTTATTGCAACATGAACTAAGCAGTACACAAGTG
GCCGAGAGCAGTGTGGTGATACGGCAGCGGGTCGAGGTTGCACGTCAATTACAATTAAAACGTCAGCAGTGCCCGAATGC
TGGATTAATGCCTAGGCAAACGCTGCGAGCCATGGAGTGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.102

100

0.552
  comM Haemophilus influenzae Rd KW20

54.072

100

0.543
  comM Glaesserella parasuis strain SC1401

53.759

99.773

0.536
  comM Vibrio campbellii strain DS40M4

53.776

99.318

0.534
  comM Legionella pneumophila str. Paris

52.315

98.182

0.514
  comM Legionella pneumophila strain ERS1305867

52.315

98.182

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.495

100

0.459

Multiple sequence alignment