Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACGEDC_RS06445 Genome accession   NZ_CP171406
Coordinates   1467777..1469297 (+) Length   506 a.a.
NCBI ID   WP_394497203.1    Uniprot ID   -
Organism   Shewanella sp. WPAGA9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1462777..1474297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGEDC_RS06420 ilvY 1463049..1463921 (+) 873 WP_394497193.1 HTH-type transcriptional activator IlvY -
  ACGEDC_RS06425 - 1463959..1464969 (-) 1011 WP_394497195.1 substrate-binding domain-containing protein -
  ACGEDC_RS06430 - 1465338..1466585 (+) 1248 WP_394497197.1 YjgN family protein -
  ACGEDC_RS06435 - 1466614..1466877 (+) 264 WP_394497199.1 hypothetical protein -
  ACGEDC_RS06440 - 1466813..1467637 (+) 825 WP_394497201.1 M48 family metallopeptidase -
  ACGEDC_RS06445 comM 1467777..1469297 (+) 1521 WP_394497203.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACGEDC_RS06450 - 1469440..1470335 (+) 896 Protein_1240 acyltransferase -
  ACGEDC_RS06455 - 1470340..1471272 (+) 933 WP_394497206.1 acyltransferase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55146.47 Da        Isoelectric Point: 7.9491

>NTDB_id=1061202 ACGEDC_RS06445 WP_394497203.1 1467777..1469297(+) (comM) [Shewanella sp. WPAGA9]
MAIACVVTRACCGVEAPKVTVEVHLSNGLPAFNLVGLPETSVKEARERVRSALINAGFEFPMQRITVNLAPADLPKQGGR
YDLPIAIGILAASGQVPSDKLAHSEFIGELALSGEVRPCIGILPAIIAAKNQQHQLFIPLENRREAELVGFEQTHFVAHL
QHLAAFMHGQAQLPLVDQQPQWFEDEATGPQLCLSEVIGQYQAKQGLEIAAAGGHNTLFLGPPGTGKSMLANRIIPLLPK
LSYEEAIDVAAIHSVAGLNIKPNAFLERPFRAPHHTCSSISLVGGGSIPKPGEISLAHRGILFLDEIAEFPRKVLDCLRE
PMESGEVVISRASAKVKFSSRFQLIAAMNPSPCGDVDNARSTPDQIQRYLSKLSGPFLDRFDLTIEVPKLPAGTLTQPQQ
TAESSASIAKRVNQARQIQLSRAGLLNSELSPSLLKQHLNMNQADLEFLDASVQQLGLSVRSFHRIQRVARTIADLQQSK
TTERRHIAQALGYRAMDRLMHRLSQQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1061202 ACGEDC_RS06445 WP_394497203.1 1467777..1469297(+) (comM) [Shewanella sp. WPAGA9]
ATGGCGATTGCCTGCGTTGTCACACGTGCTTGCTGCGGCGTTGAAGCTCCTAAAGTCACAGTCGAAGTTCACTTAAGTAA
TGGATTACCTGCTTTTAATTTAGTCGGATTACCAGAAACCTCAGTAAAAGAAGCCCGTGAACGGGTTAGAAGTGCATTAA
TCAACGCCGGCTTTGAGTTTCCCATGCAGCGCATTACTGTTAATCTCGCTCCAGCCGACCTCCCCAAACAAGGAGGTCGA
TATGACTTGCCCATTGCAATCGGTATTTTAGCGGCTTCAGGCCAAGTGCCGTCGGATAAGTTGGCTCACAGTGAATTTAT
TGGAGAGCTGGCGTTATCGGGAGAGGTTCGTCCATGTATTGGCATACTGCCAGCAATCATTGCAGCCAAAAACCAACAAC
ATCAATTGTTTATCCCTTTAGAAAACAGACGAGAAGCAGAGTTAGTCGGCTTTGAGCAAACTCACTTTGTTGCCCATTTA
CAACACCTTGCCGCCTTTATGCATGGTCAAGCTCAACTACCACTTGTTGACCAGCAACCGCAATGGTTTGAAGATGAAGC
AACAGGCCCGCAGTTATGCTTAAGCGAAGTTATAGGCCAATATCAGGCCAAGCAAGGGTTAGAAATCGCTGCAGCAGGTG
GGCACAATACTTTATTTTTAGGCCCTCCCGGCACCGGCAAAAGTATGCTCGCTAACCGAATCATTCCGCTATTGCCCAAG
CTCAGCTATGAAGAAGCTATTGATGTTGCCGCTATTCATTCTGTCGCAGGGTTAAACATCAAACCAAACGCTTTTCTTGA
ACGTCCCTTTAGAGCACCACACCACACATGCTCATCAATTTCATTAGTTGGCGGTGGCAGCATCCCAAAGCCAGGTGAGA
TATCACTAGCCCATAGAGGAATATTGTTTTTAGATGAAATAGCCGAGTTTCCACGTAAAGTATTAGATTGCTTACGTGAA
CCTATGGAGTCTGGCGAAGTCGTCATTTCTCGCGCATCAGCAAAAGTAAAATTCTCGAGTCGTTTTCAACTGATTGCAGC
CATGAACCCAAGCCCTTGTGGCGATGTAGATAATGCCCGCTCAACCCCCGACCAAATTCAGCGTTATCTATCTAAACTTT
CAGGCCCATTTTTAGACCGTTTTGATTTAACAATCGAAGTCCCTAAACTGCCAGCAGGCACTCTCACCCAACCCCAGCAA
ACTGCTGAAAGCAGTGCAAGCATTGCCAAAAGGGTCAATCAAGCAAGACAGATACAGTTATCGCGCGCAGGTTTGCTCAA
CAGTGAACTGTCCCCTTCACTGTTAAAACAGCATTTAAACATGAACCAAGCTGACTTAGAGTTTTTAGACGCAAGTGTGC
AGCAGCTCGGTTTATCTGTGAGAAGCTTTCATCGGATCCAGCGGGTTGCTCGAACCATCGCAGACCTACAACAATCCAAA
ACAACTGAAAGACGTCATATTGCTCAAGCATTAGGATATCGAGCCATGGATAGATTGATGCATCGATTGAGTCAGCAGTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.709

100

0.559
  comM Vibrio campbellii strain DS40M4

54.724

100

0.549
  comM Haemophilus influenzae Rd KW20

53.922

100

0.543
  comM Glaesserella parasuis strain SC1401

52.964

100

0.53
  comM Legionella pneumophila str. Paris

46.493

98.617

0.458
  comM Legionella pneumophila strain ERS1305867

46.493

98.617

0.458
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.744

99.407

0.425

Multiple sequence alignment