Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACGTGP_RS14880 Genome accession   NZ_CP171398
Coordinates   3181332..3182462 (+) Length   376 a.a.
NCBI ID   WP_057050219.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3176332..3187462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS14855 (ACGTGP_14855) - 3176592..3176798 (-) 207 WP_000182542.1 hypothetical protein -
  ACGTGP_RS14860 (ACGTGP_14860) - 3176852..3178966 (-) 2115 WP_272264853.1 TonB-dependent copper receptor -
  ACGTGP_RS14865 (ACGTGP_14865) - 3179039..3179467 (-) 429 WP_000231981.1 DUF2946 family protein -
  ACGTGP_RS14870 (ACGTGP_14870) def 3179504..3180034 (-) 531 WP_001196539.1 peptide deformylase -
  ACGTGP_RS14875 (ACGTGP_14875) tsaP 3180157..3181311 (+) 1155 WP_000755283.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACGTGP_RS14880 (ACGTGP_14880) dprA 3181332..3182462 (+) 1131 WP_057050219.1 DNA-processing protein DprA Machinery gene
  ACGTGP_RS14885 (ACGTGP_14885) - 3182513..3183082 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ACGTGP_RS14890 (ACGTGP_14890) - 3183474..3184394 (-) 921 WP_272264851.1 DMT family transporter -
  ACGTGP_RS14895 (ACGTGP_14895) - 3184500..3185150 (-) 651 WP_394556064.1 TetR/AcrR family transcriptional regulator -
  ACGTGP_RS14900 (ACGTGP_14900) - 3185287..3186501 (+) 1215 WP_000372838.1 MFS transporter -
  ACGTGP_RS14905 (ACGTGP_14905) - 3186523..3187287 (+) 765 WP_000786954.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41856.39 Da        Isoelectric Point: 6.4547

>NTDB_id=1061160 ACGTGP_RS14880 WP_057050219.1 3181332..3182462(+) (dprA) [Acinetobacter baumannii strain T24]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGNCEKATQPDGLAKWSSLGLHANHLKRVSEFQTPQGQTQFEQLVQQV
VQHTDFILTPDDSGYPTQLLPYTDYPPIIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFFISSGLAYG
IDEAAHQGASAHQRTIAVTGTGLDTTYPAQNKKLAEHILAQNGAIITEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKTVFAIPGHIYSEFHQGCHQLIREGAILIDHPEQIIEDLALPTQWQSQQQNQTEEANTNTPEIP
EHLIDLYQSLDWVGQNIDQLVIHHNVPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1061160 ACGTGP_RS14880 WP_057050219.1 3181332..3182462(+) (dprA) [Acinetobacter baumannii strain T24]
ATGCTCACTCAACTTTCTTCACACCACTACCACACACTTAAAGTGTGGTATTTGGTGCAGCACTCTTTAGTCAGCTTTAA
AAAAATTATTGATTATTTTGGAAATTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGTCCTCTCTAGGGCTAC
ATGCTAATCACTTAAAACGTGTAAGCGAGTTTCAAACGCCCCAAGGTCAGACGCAGTTTGAACAACTTGTACAACAAGTT
GTTCAACATACGGATTTTATTTTAACGCCGGATGACTCTGGCTATCCCACTCAATTACTTCCTTATACAGATTATCCACC
TATTATTTTTGGGAAAGGTCAAGCGCAAGCTTTATTGCAACCTCAAATTGCAATTGTCGGTAGCCGAAAACCAAGCCCAC
ATGGACGACAGGTCGCTTATGATTTTGCCTATTACTTAAGTGAAAAGGGCTTTTTCATTAGTAGTGGTCTGGCTTATGGC
ATTGATGAAGCCGCTCATCAAGGTGCATCTGCTCATCAACGTACCATTGCAGTGACGGGTACGGGCTTAGACACTACTTA
TCCAGCTCAAAATAAAAAACTTGCAGAACATATTTTGGCTCAAAACGGCGCCATTATTACTGAGTTTTTACCGGGTACAC
CACCATTACAACAACATTTTCCACGTAGAAACCGAATTGTCAGCGGTTTGAGTTTAGGCGTTTTGGTGGTAGAAGCGACA
TTAAAAAGCGGCTCACTCATCACGGCCAATAAAGCTGCTGAACAAGGTAAAACCGTATTCGCGATTCCGGGTCATATTTA
TAGCGAGTTTCATCAAGGATGCCATCAACTTATTCGTGAAGGTGCAATTTTAATCGACCATCCTGAACAAATTATTGAGG
ATCTTGCTTTACCAACCCAATGGCAAAGTCAGCAACAAAATCAAACTGAAGAAGCTAATACGAATACTCCAGAAATTCCT
GAGCATTTGATTGACCTTTATCAGTCTTTAGACTGGGTAGGACAAAATATTGACCAGCTTGTAATTCATCATAATGTGCC
GGTTTCTGAACTGACCTCTTCACTAATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGGCTGTATTTACGTT
GTCGTTCTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii D1279779

97.606

100

0.976

  dprA Acinetobacter baumannii strain A118

97.34

100

0.973

  dprA Acinetobacter baylyi ADP1

70.604

100

0.715

  dprA Vibrio cholerae strain A1552

42.9

88.032

0.378


Multiple sequence alignment