Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   ACGTGP_RS14875 Genome accession   NZ_CP171398
Coordinates   3180157..3181311 (+) Length   384 a.a.
NCBI ID   WP_000755283.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain T24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3175157..3186311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGTGP_RS14850 (ACGTGP_14850) - 3175308..3176522 (+) 1215 WP_272264854.1 oxygenase MpaB family protein -
  ACGTGP_RS14855 (ACGTGP_14855) - 3176592..3176798 (-) 207 WP_000182542.1 hypothetical protein -
  ACGTGP_RS14860 (ACGTGP_14860) - 3176852..3178966 (-) 2115 WP_272264853.1 TonB-dependent copper receptor -
  ACGTGP_RS14865 (ACGTGP_14865) - 3179039..3179467 (-) 429 WP_000231981.1 DUF2946 family protein -
  ACGTGP_RS14870 (ACGTGP_14870) def 3179504..3180034 (-) 531 WP_001196539.1 peptide deformylase -
  ACGTGP_RS14875 (ACGTGP_14875) tsaP 3180157..3181311 (+) 1155 WP_000755283.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACGTGP_RS14880 (ACGTGP_14880) dprA 3181332..3182462 (+) 1131 WP_057050219.1 DNA-processing protein DprA Machinery gene
  ACGTGP_RS14885 (ACGTGP_14885) - 3182513..3183082 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  ACGTGP_RS14890 (ACGTGP_14890) - 3183474..3184394 (-) 921 WP_272264851.1 DMT family transporter -
  ACGTGP_RS14895 (ACGTGP_14895) - 3184500..3185150 (-) 651 WP_394556064.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42406.34 Da        Isoelectric Point: 8.2461

>NTDB_id=1061159 ACGTGP_RS14875 WP_000755283.1 3180157..3181311(+) (tsaP) [Acinetobacter baumannii strain T24]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYDVYREGEPYYFIDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1061159 ACGTGP_RS14875 WP_000755283.1 3180157..3181311(+) (tsaP) [Acinetobacter baumannii strain T24]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCTTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCCCCCTCCCTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGTGATGGCTGTGTCGGTATTATTCGCCGCTATACAGGTCAAACCACAAACC
TACAACCACAAGTTCGCGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACCGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGACGTCTACCGAGAAGGTGAACCTT
ACTATTTCATAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.958

100

0.99


Multiple sequence alignment