Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACF6ZU_RS11805 Genome accession   NZ_CP171224
Coordinates   2537484..2538977 (+) Length   497 a.a.
NCBI ID   WP_392892587.1    Uniprot ID   -
Organism   Pseudomonas migulae strain HY-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2532484..2543977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF6ZU_RS11780 (ACF6ZU_11780) - 2532831..2534168 (-) 1338 WP_392892552.1 ammonium transporter -
  ACF6ZU_RS11785 (ACF6ZU_11785) glnK 2534205..2534543 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  ACF6ZU_RS11790 (ACF6ZU_11790) - 2534961..2535221 (+) 261 WP_008030504.1 accessory factor UbiK family protein -
  ACF6ZU_RS11795 (ACF6ZU_11795) - 2535655..2536176 (+) 522 WP_392892586.1 Bro-N domain-containing protein -
  ACF6ZU_RS11800 (ACF6ZU_11800) - 2536228..2536533 (-) 306 WP_392893781.1 HigA family addiction module antitoxin -
  ACF6ZU_RS11805 (ACF6ZU_11805) comM 2537484..2538977 (+) 1494 WP_392892587.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACF6ZU_RS11810 (ACF6ZU_11810) - 2539163..2540539 (+) 1377 WP_392892588.1 SrfA family protein -
  ACF6ZU_RS11815 (ACF6ZU_11815) - 2540557..2543622 (+) 3066 WP_392892590.1 virulence factor SrfB -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52933.05 Da        Isoelectric Point: 8.2127

>NTDB_id=1060544 ACF6ZU_RS11805 WP_392892587.1 2537484..2538977(+) (comM) [Pseudomonas migulae strain HY-2]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVAPYVSNGLLYASKPYPDLNEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
HEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAVLVADARERQHKRQGCANAFLDLPGLRKHCTLSTADENWLESACERLLLSLRSAHRLLKVARTLADLEQADG
ISRQHLAEALQYRPSAH

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1060544 ACF6ZU_RS11805 WP_392892587.1 2537484..2538977(+) (comM) [Pseudomonas migulae strain HY-2]
ATGTCTCTCTCCATCGTCCACAGCCGCGCCCAAATCGGCGTGGATGCGCCCGCCGTCACCGTCGAAGTCCACCTGGCCAA
TGGCTTGCCATCGCTGACCATGGTCGGTTTACCCGAGGCGGCAGTGAAGGAAAGCAAGGACCGGGTGCGCAGTGCAATCA
TCAATTCAGGCCTGCAATTCCCGGCGCGACGCATCACGCTGAATCTCGCTCCCGCCGACCTGCCAAAGGACGGCGGGCGA
TTCGATCTGGCGATTGCACTGGGGATTCTGTCCGCCAGCGTGCAGGTGCCAACGCTGACACTGGATGACGTGGAATGCCT
GGGCGAACTGGCGCTGTCAGGCGCAGTGCGTGCCGTGCGAGGTGTGCTGCCAGCCGCACTGGCCGCGCGTAAGGCCGGGC
GTTCACTGATGGTGCCGCGGGCGAATGCCGAGGAGGCGTGCCTGGCGTCGGGACTGAAGGTGATCGCGGTGGATCATTTG
CTGGAAGCGGTGGCGCACTTCAACGGGCACACACCGGTCGCGCCTTACGTGTCCAACGGTTTGCTCTATGCCAGCAAACC
TTATCCAGACTTGAACGAAGTACAGGGTCAGCTCTCGGCCAAGCGCGCACTGCTGATTGCGGCGGCGGGCGCGCATAACC
TGTTGTTCAGCGGGCCGCCGGGCACTGGAAAAACACTGTTGGCGAGTCGTCTGCCGGGACTGCTGCCGCCATTGGCCGAA
CATGAAGCGCTGGAAGTCGCCGCCATTCAGTCCGTCACCAGTTGCGTGCCCTTGAGCCATTGGCCGCAGAGGCCTTTCCG
CCAGCCCCATCACTCGGCCTCTGGCCCAGCGTTGGTGGGCGGCGGTTCGAAGCCGCAACCGGGTGAAATTACCCTCGCCC
ACCATGGCGTTCTATTCCTCGATGAACTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTTTTGCGAGAACCGCTGGAGTCC
GGGCACATCGTGATTTCCCGCGCCAAGGATCGCGTGAGGTTTCCGGCCCGTTTTCAATTGGTGGCGGCGATGAACCCGTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCAAATGCAGTTGTACGCCGGACATGGTCCAGCGCTACCGCAACAAGTTGT
CGGGACCGTTGCTGGATCGCATCGATCTGCACCTGACCGTCGCCCGGGAAGCCACGGCGCTGAATCCTGCACTCAAACCC
GGTGACGACACGGCCACCGCCGCCGTTCTGGTGGCCGATGCCAGAGAGCGTCAGCACAAGCGTCAGGGATGCGCGAATGC
GTTTCTTGATCTGCCGGGCCTGCGCAAGCACTGCACGTTATCCACAGCCGATGAAAACTGGCTGGAATCCGCCTGTGAAC
GCCTGCTGCTGTCATTACGATCGGCCCACCGCTTGCTCAAGGTCGCCCGCACGCTGGCGGATCTGGAGCAGGCTGACGGG
ATCAGCCGGCAACATCTGGCGGAGGCATTGCAGTATCGACCCAGTGCTCATTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.949

99.598

0.547
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

49.602

100

0.501
  comM Legionella pneumophila strain ERS1305867

49.602

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.509

100

0.459

Multiple sequence alignment