Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACF8MK_RS08490 Genome accession   NZ_CP171154
Coordinates   1980006..1981517 (-) Length   503 a.a.
NCBI ID   WP_392536296.1    Uniprot ID   -
Organism   Legionella sp. 227     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1975006..1986517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8MK_RS08465 (ACF8MK_08465) - 1975557..1976300 (+) 744 WP_265703371.1 type II/III secretion system protein -
  ACF8MK_RS08470 (ACF8MK_08470) - 1976380..1976943 (+) 564 WP_265703372.1 YqgE/AlgH family protein -
  ACF8MK_RS08475 (ACF8MK_08475) ruvX 1976936..1977355 (+) 420 WP_265703473.1 Holliday junction resolvase RuvX -
  ACF8MK_RS08480 (ACF8MK_08480) - 1977499..1978395 (+) 897 WP_392536294.1 aspartate carbamoyltransferase catalytic subunit -
  ACF8MK_RS08485 (ACF8MK_08485) - 1978550..1979869 (+) 1320 WP_392536295.1 glycosyltransferase family 87 protein -
  ACF8MK_RS08490 (ACF8MK_08490) comM 1980006..1981517 (-) 1512 WP_392536296.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACF8MK_RS08495 (ACF8MK_08495) - 1981710..1981967 (-) 258 WP_058510814.1 accessory factor UbiK family protein -
  ACF8MK_RS08500 (ACF8MK_08500) - 1982030..1982371 (+) 342 WP_028380978.1 P-II family nitrogen regulator -
  ACF8MK_RS08505 (ACF8MK_08505) - 1982368..1982949 (-) 582 WP_392536297.1 5-formyltetrahydrofolate cyclo-ligase -
  ACF8MK_RS08510 (ACF8MK_08510) - 1983211..1983408 (+) 198 WP_265703377.1 PA3496 family putative envelope integrity protein -
  ACF8MK_RS08515 (ACF8MK_08515) - 1983478..1984299 (+) 822 WP_392536298.1 aminotransferase class IV -
  ACF8MK_RS08520 (ACF8MK_08520) - 1984253..1984939 (-) 687 WP_392538940.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54888.13 Da        Isoelectric Point: 8.0076

>NTDB_id=1060334 ACF8MK_RS08490 WP_392536296.1 1980006..1981517(-) (comM) [Legionella sp. 227]
MNLAFTKTRSTVGILAQPVSVEVHLSNGLPGFTIVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPADLPKTGSG
FDLPIALGILAASKQIPQNQLTDHEFIAELALSGELRGISAIIPAVLAANKEKSSLIIASANAHEASLTGYQNIYSANNL
REVCSYLCQGTSLHFLPPKPESCTMRYTDDWSDIKGQFHAKKAMEIAAYGGHSILLNGAPGSGKTMLARRFRTLLPPLSE
AEALDCIAINSIRGKLPDFSEWCSPPFRTPHHTASPVSLVGGGNPPKPGEISLAHHGVLFLDELPEFDRQVLETLRQPLE
SGTICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNPQANCLCSPDRIKRYHAKISAPLLDRIDMHISVQALTQEELVTPN
SNPHKQSDLIREQVIKVRAIQLERQDCLNAYLGANTCEKICALGSQEQDFLRQSMLQLKLSARGYHRLLKVARTIADIHA
SSQVCLEHLQQALSFRHALRTPG

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=1060334 ACF8MK_RS08490 WP_392536296.1 1980006..1981517(-) (comM) [Legionella sp. 227]
ATGAATCTTGCGTTTACTAAAACACGTAGTACTGTGGGGATATTGGCACAACCTGTGTCAGTAGAAGTTCATTTATCGAA
TGGTTTGCCTGGTTTTACAATCGTAGGTCTTGCTGAAACCGCCGTGAAAGAAAGCAAGGATCGAGTCCGTTCTGCGATTA
TTAATAGCCAGTTTGAATTTCCCTGCCGAAAAATCACCGTCAATTTGGGGCCTGCTGATTTACCTAAAACAGGAAGTGGT
TTTGATTTACCAATCGCTCTTGGTATTCTTGCAGCTTCCAAGCAAATTCCTCAAAACCAATTAACCGACCATGAGTTTAT
AGCTGAACTTGCTTTAAGTGGTGAGCTTCGAGGCATTTCCGCTATTATTCCAGCTGTCTTAGCGGCAAACAAAGAAAAAA
GCTCACTGATTATCGCCAGTGCTAATGCACATGAAGCCTCCTTGACCGGATATCAAAACATCTATAGTGCAAATAACTTG
CGTGAAGTATGCAGCTACCTTTGTCAAGGAACTTCATTACACTTCCTCCCCCCTAAACCTGAATCATGCACCATGCGCTA
TACAGACGATTGGTCTGATATTAAAGGTCAGTTTCATGCGAAAAAAGCAATGGAAATTGCAGCATATGGCGGGCACAGTA
TTTTACTCAATGGTGCTCCTGGAAGCGGAAAAACCATGTTAGCCAGGCGATTCAGAACTCTATTGCCTCCCTTATCTGAA
GCAGAAGCCCTAGATTGTATCGCAATCAACTCCATACGCGGTAAATTACCTGATTTCAGTGAATGGTGCTCCCCACCTTT
TCGCACCCCCCATCATACTGCCTCCCCCGTATCCTTAGTTGGTGGGGGAAATCCCCCAAAACCAGGAGAAATTTCTCTAG
CACATCATGGGGTCTTATTTTTGGATGAGTTACCTGAATTTGATCGACAAGTCCTAGAAACCTTAAGACAACCACTCGAA
TCAGGAACAATATGCATTTCAAGAGCGGCAGCACAAATAGAATTTCCAGCGAAATTTCAGCTCATCGCTGCAATGAATCC
CTGCCCATGTGGACAATGGGGCAATCCTCAGGCGAACTGTTTGTGTAGCCCTGATCGCATCAAGCGATATCATGCCAAAA
TTTCAGCCCCTTTACTGGATCGTATTGACATGCATATCTCCGTCCAGGCACTTACTCAAGAGGAATTAGTTACCCCGAAT
AGTAATCCTCATAAACAAAGTGATCTGATCCGAGAGCAGGTTATTAAAGTACGAGCCATCCAGTTGGAGCGACAAGATTG
TCTTAATGCCTATTTAGGAGCAAATACATGTGAAAAAATTTGTGCATTAGGTTCTCAGGAACAAGATTTTTTACGACAGT
CTATGTTGCAACTCAAACTGTCTGCTCGGGGGTATCATCGTTTATTGAAAGTTGCACGAACTATTGCTGACATCCACGCA
AGCAGCCAGGTATGCTTAGAGCATTTACAACAAGCTTTATCCTTTAGACATGCCTTACGCACTCCTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

77.49

99.801

0.773
  comM Legionella pneumophila strain ERS1305867

77.49

99.801

0.773
  comM Haemophilus influenzae Rd KW20

50.397

100

0.505
  comM Vibrio cholerae strain A1552

49.597

98.608

0.489
  comM Vibrio campbellii strain DS40M4

48.992

98.608

0.483
  comM Glaesserella parasuis strain SC1401

47.094

99.205

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.685

99.205

0.423

Multiple sequence alignment