Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACF8MK_RS02725 Genome accession   NZ_CP171154
Coordinates   656133..656603 (+) Length   156 a.a.
NCBI ID   WP_265702134.1    Uniprot ID   -
Organism   Legionella sp. 227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 651133..661603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF8MK_RS02695 (ACF8MK_02695) - 651377..651790 (-) 414 WP_265702139.1 acyl carrier protein -
  ACF8MK_RS02700 (ACF8MK_02700) fabL 651878..652633 (-) 756 WP_392538081.1 enoyl-[acyl-carrier-protein] reductase FabL -
  ACF8MK_RS02705 (ACF8MK_02705) - 652874..654235 (+) 1362 WP_392538082.1 MFS transporter -
  ACF8MK_RS02710 (ACF8MK_02710) - 654247..654588 (+) 342 WP_392538083.1 cupin domain-containing protein -
  ACF8MK_RS02715 (ACF8MK_02715) queF 654681..655538 (-) 858 WP_392539001.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  ACF8MK_RS02720 (ACF8MK_02720) - 655779..655898 (-) 120 Protein_538 MerR family DNA-binding transcriptional regulator -
  ACF8MK_RS02725 (ACF8MK_02725) ssb 656133..656603 (+) 471 WP_265702134.1 single-stranded DNA-binding protein Machinery gene
  ACF8MK_RS02730 (ACF8MK_02730) - 656856..657215 (+) 360 WP_392538084.1 cupin domain-containing protein -
  ACF8MK_RS02735 (ACF8MK_02735) rplQ 657367..657750 (-) 384 WP_265702132.1 50S ribosomal protein L17 -
  ACF8MK_RS02740 (ACF8MK_02740) - 657769..658761 (-) 993 WP_028381374.1 DNA-directed RNA polymerase subunit alpha -
  ACF8MK_RS02745 (ACF8MK_02745) rpsD 658780..659400 (-) 621 WP_392538085.1 30S ribosomal protein S4 -
  ACF8MK_RS02750 (ACF8MK_02750) rpsK 659417..659815 (-) 399 WP_003633055.1 30S ribosomal protein S11 -
  ACF8MK_RS02755 (ACF8MK_02755) rpsM 659837..660193 (-) 357 WP_019233380.1 30S ribosomal protein S13 -
  ACF8MK_RS02760 (ACF8MK_02760) rpmJ 660271..660384 (-) 114 WP_010946099.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17359.26 Da        Isoelectric Point: 4.7980

>NTDB_id=1060327 ACF8MK_RS02725 WP_265702134.1 656133..656603(+) (ssb) [Legionella sp. 227]
MARGINKVILIGNVGVDPDVRYLPNGNAVTTLSIATSEAWKDKATGEKQERTEWHRVVCFNRLGEIAGEYVRKGSKLYIE
GSLRTRKWQDQQGQDRYTTEIVANDIQLLDSKGAGSSSFDEMPQAQFAPSNQSAARQQPAQVPQDAFDQLDDDVPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=1060327 ACF8MK_RS02725 WP_265702134.1 656133..656603(+) (ssb) [Legionella sp. 227]
ATGGCACGTGGTATAAATAAAGTCATCTTAATTGGTAACGTCGGTGTTGACCCAGATGTACGTTATTTACCTAATGGCAA
TGCGGTAACTACACTTTCCATTGCTACCAGTGAAGCGTGGAAAGATAAAGCAACGGGTGAAAAGCAGGAGCGGACCGAAT
GGCATAGGGTAGTCTGTTTTAACCGCTTAGGTGAAATCGCTGGTGAATACGTCCGTAAAGGTTCTAAACTCTATATTGAA
GGCAGTTTAAGAACGAGAAAATGGCAAGATCAACAGGGTCAAGATAGATACACTACAGAGATTGTAGCAAATGACATTCA
ACTGTTAGACAGTAAAGGGGCCGGTTCATCCAGTTTTGATGAAATGCCACAGGCTCAATTTGCGCCAAGCAATCAAAGTG
CTGCAAGACAACAACCAGCTCAAGTACCACAAGATGCTTTTGATCAATTGGATGATGATGTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.562

100

0.577
  ssb Vibrio cholerae strain A1552

48.603

100

0.558
  ssb Neisseria meningitidis MC58

41.714

100

0.468
  ssb Neisseria gonorrhoeae MS11

41.143

100

0.462

Multiple sequence alignment