Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACFFRD_RS11280 Genome accession   NZ_CP171148
Coordinates   1307825..1308190 (+) Length   121 a.a.
NCBI ID   WP_069073698.1    Uniprot ID   A0A2D0HCN5
Organism   Nostoc sp. C110     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302825..1313190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFFRD_RS11265 tilS 1303130..1304116 (+) 987 WP_392481519.1 tRNA lysidine(34) synthetase TilS -
  ACFFRD_RS11270 hmpF 1304245..1306005 (-) 1761 WP_392481520.1 pilus motility taxis protein HmpF -
  ACFFRD_RS11275 - 1306415..1307611 (+) 1197 WP_193947534.1 response regulator -
  ACFFRD_RS11280 pilH 1307825..1308190 (+) 366 WP_069073698.1 response regulator transcription factor Machinery gene
  ACFFRD_RS11285 - 1308204..1308734 (+) 531 WP_392481521.1 chemotaxis protein CheW -
  ACFFRD_RS11290 - 1308749..1311679 (+) 2931 WP_392481522.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13350.52 Da        Isoelectric Point: 4.8604

>NTDB_id=1060296 ACFFRD_RS11280 WP_069073698.1 1307825..1308190(+) (pilH) [Nostoc sp. C110]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1060296 ACFFRD_RS11280 WP_069073698.1 1307825..1308190(+) (pilH) [Nostoc sp. C110]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTAAAAGCAACTGGCCTAAC
AGTTACCCATGCCAGCGATGGATTAGAAGCATTGGAGGCAATCCAAATAGCACCTCCCGATTTAGTGGTGTTAGATATTG
TCATGCCCCGGATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCCAAAACCCAAAATGTCCCGGTGGTGATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGCTACTGGGGTATGAAGCAGGGTGCAGATGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D0HCN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment