Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACF3OJ_RS10495 Genome accession   NZ_CP171111
Coordinates   2171238..2172734 (+) Length   498 a.a.
NCBI ID   WP_079538773.1    Uniprot ID   -
Organism   Cardiobacterium hominis strain WGS1530     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2166238..2177734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3OJ_RS10475 (ACF3OJ_10475) - 2167403..2167849 (+) 447 WP_392405662.1 AAA family ATPase -
  ACF3OJ_RS10480 (ACF3OJ_10480) - 2167839..2168609 (+) 771 WP_392405663.1 tRNA(His) guanylyltransferase Thg1 family protein -
  ACF3OJ_RS10485 (ACF3OJ_10485) - 2168606..2169271 (+) 666 WP_392405664.1 DNA alkylation repair protein -
  ACF3OJ_RS10490 (ACF3OJ_10490) rtcR 2169561..2171162 (+) 1602 WP_392405665.1 RNA repair transcriptional activator RtcR -
  ACF3OJ_RS10495 (ACF3OJ_10495) comM 2171238..2172734 (+) 1497 WP_079538773.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACF3OJ_RS10500 (ACF3OJ_10500) recF 2172731..2173810 (+) 1080 WP_392405666.1 DNA replication/repair protein RecF -
  ACF3OJ_RS10505 (ACF3OJ_10505) - 2173824..2174666 (+) 843 WP_392405667.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  ACF3OJ_RS10510 (ACF3OJ_10510) - 2175003..2175485 (-) 483 WP_392405668.1 peroxiredoxin family protein -
  ACF3OJ_RS10515 (ACF3OJ_10515) - 2175632..2176072 (+) 441 WP_004142841.1 four-helix bundle copper-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53274.66 Da        Isoelectric Point: 7.7695

>NTDB_id=1060144 ACF3OJ_RS10495 WP_079538773.1 2171238..2172734(+) (comM) [Cardiobacterium hominis strain WGS1530]
MNLATTYTRAPLSMHAPLVRVEVHLASGLPAMTLVGLPEKAVKESKDRVRAAILNSGFEFPAKHITINLAPAELPKDGAR
YDLAIALGILAASGQIPPDATAAHEYHGELALSGQLRPVSGILPCALAATDAHRDIITAPENHHEAALVAADNTHSAGSL
AEIAAILHGQRDWPAPPAAALRPPRQYPDYADVIGQHQAKRALLVAAAGGHHVLMSGPPGTGKSMLAQRFPGILPAMNDA
EAIESAAIRSLAGGGFNPADWRQRPYRAPHHSSSATALVGGGSIPKPGEISLAHHGVLFLDELPEFDRRVLEMLREPLEN
GHITISRAAMKSDFPARFQLIAAMNPCPCGYHGDPERACSDTPDQIARYRQKISGPLLDRIDIHLTVARLTPAQLRAQHS
PGETSAHLRAQSEAARAIQLRRQGGANAELSGRALNQHLHAEADVLPLLDRAAERMHLSMRSYQRILKVARTIADLADSS
TVSRAHLAEALQYRSDSA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1060144 ACF3OJ_RS10495 WP_079538773.1 2171238..2172734(+) (comM) [Cardiobacterium hominis strain WGS1530]
ATGAACCTCGCCACCACCTACACCCGCGCCCCCCTGAGCATGCACGCGCCGCTGGTGCGGGTCGAAGTCCACCTTGCCAG
CGGCCTGCCGGCGATGACCCTCGTCGGCCTGCCGGAAAAAGCCGTCAAAGAAAGCAAAGACCGCGTTCGCGCCGCCATCT
TGAACAGCGGCTTCGAGTTTCCGGCAAAACACATCACCATCAACCTCGCCCCGGCAGAACTGCCCAAAGACGGTGCGCGC
TACGACCTCGCCATCGCACTCGGCATCCTCGCCGCCTCCGGACAAATCCCGCCAGACGCCACCGCCGCGCACGAATACCA
CGGCGAACTCGCCTTGAGCGGCCAACTGCGCCCGGTGAGCGGCATCCTGCCCTGCGCGCTCGCCGCTACAGACGCCCACC
GCGACATCATCACCGCACCGGAAAACCACCACGAAGCCGCGCTGGTCGCCGCGGACAACACCCACAGCGCGGGCAGCCTC
GCCGAAATCGCCGCCATCCTGCACGGCCAGCGCGACTGGCCCGCGCCGCCCGCCGCCGCCCTGCGCCCACCACGCCAATA
CCCCGACTACGCCGACGTCATCGGCCAGCACCAGGCAAAACGCGCCCTGCTCGTCGCCGCCGCCGGTGGCCATCACGTGC
TGATGAGCGGCCCGCCCGGCACCGGTAAATCCATGCTGGCGCAGCGCTTCCCCGGCATCCTGCCCGCGATGAACGACGCA
GAGGCCATCGAAAGCGCCGCCATCCGCTCGCTTGCCGGAGGCGGCTTCAACCCCGCCGACTGGCGGCAGCGCCCCTACCG
CGCGCCACACCACAGCAGCTCCGCCACCGCGCTGGTTGGCGGCGGCTCCATCCCAAAACCGGGCGAAATCAGCCTCGCCC
ACCACGGCGTCCTCTTTCTTGACGAACTGCCCGAATTCGACCGCCGCGTCCTCGAAATGCTGCGTGAACCGCTGGAAAAC
GGCCACATCACCATCAGCCGCGCCGCGATGAAAAGCGACTTCCCCGCGCGCTTCCAACTCATCGCCGCCATGAACCCCTG
CCCCTGCGGCTACCACGGCGACCCCGAACGCGCCTGCAGCGACACCCCCGACCAAATCGCACGTTACCGCCAAAAAATCT
CCGGGCCGCTGCTCGACCGCATCGACATTCACCTCACCGTCGCCCGCCTGACACCCGCACAACTGCGCGCGCAGCACAGC
CCCGGCGAAACCAGCGCCCACCTGCGCGCACAAAGCGAAGCGGCGCGCGCCATACAGCTGCGCCGCCAGGGAGGCGCCAA
CGCCGAATTAAGCGGACGCGCGCTCAACCAACACCTGCACGCCGAAGCAGACGTCCTGCCACTACTTGACCGCGCCGCCG
AACGCATGCACCTCTCCATGCGCAGCTACCAGCGTATCCTCAAAGTCGCGCGCACCATCGCCGACCTCGCAGACAGCAGC
ACCGTCAGCCGCGCGCATCTCGCCGAAGCCCTGCAATACCGCAGCGACAGCGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.4

100

0.526
  comM Vibrio campbellii strain DS40M4

52.104

100

0.522
  comM Haemophilus influenzae Rd KW20

51.098

100

0.514
  comM Glaesserella parasuis strain SC1401

50.398

100

0.508
  comM Legionella pneumophila str. Paris

50.198

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.198

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.787

100

0.446

Multiple sequence alignment