Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACFG4S_RS16530 Genome accession   NZ_CP170991
Coordinates   3841577..3841942 (+) Length   121 a.a.
NCBI ID   WP_334960544.1    Uniprot ID   -
Organism   Nostoc sp. C117     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3836577..3846942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFG4S_RS16515 - 3837199..3837600 (+) 402 WP_392535812.1 type II toxin-antitoxin system HigA family antitoxin -
  ACFG4S_RS16520 hmpF 3837718..3839481 (-) 1764 WP_392535813.1 pilus motility taxis protein HmpF -
  ACFG4S_RS16525 - 3839981..3841156 (+) 1176 WP_392535814.1 response regulator -
  ACFG4S_RS16530 pilH 3841577..3841942 (+) 366 WP_334960544.1 response regulator Machinery gene
  ACFG4S_RS16535 - 3841956..3842486 (+) 531 WP_392535815.1 chemotaxis protein CheW -
  ACFG4S_RS16540 - 3842501..3845437 (+) 2937 WP_392536000.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13362.58 Da        Isoelectric Point: 4.8604

>NTDB_id=1059950 ACFG4S_RS16530 WP_334960544.1 3841577..3841942(+) (pilH) [Nostoc sp. C117]
MSTVLIVEDSIAQREMITDLLKATGLIVTHASDGLEALEAIQIAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1059950 ACFG4S_RS16530 WP_334960544.1 3841577..3841942(+) (pilH) [Nostoc sp. C117]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCAACTGGACTAAT
AGTCACCCATGCCAGTGACGGATTAGAAGCATTGGAGGCAATTCAAATAGCACCTCCCGATTTAGTGGTATTGGATATTG
TCATGCCCCGAATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCAAAAACCCAAAATGTTCCTGTGGTTATG
TGTTCTTCCAAAGGGGAAGAATTCGATCGCTACTGGGGCATGAAACAGGGTGCAGATGCTTACATCGCCAAACCGTTTCA
ACCAACTGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment