Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACFKHK_RS06595 Genome accession   NZ_CP170760
Coordinates   1260003..1260941 (-) Length   312 a.a.
NCBI ID   WP_392461452.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1255003..1265941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS06570 prsA 1255278..1256261 (-) 984 WP_239603999.1 peptidylprolyl isomerase PrsA -
  ACFKHK_RS06575 - 1256324..1257043 (-) 720 WP_174845808.1 O-methyltransferase -
  ACFKHK_RS06580 - 1257118..1257666 (-) 549 WP_171988747.1 DUF6630 family protein -
  ACFKHK_RS06585 - 1257679..1258125 (-) 447 WP_172035738.1 hypothetical protein -
  ACFKHK_RS06590 pepF 1258122..1259930 (-) 1809 WP_392461450.1 oligoendopeptidase F Regulator
  ACFKHK_RS06595 coiA 1260003..1260941 (-) 939 WP_392461452.1 competence protein CoiA Machinery gene
  ACFKHK_RS06600 metG 1261016..1263019 (-) 2004 WP_392461454.1 methionine--tRNA ligase -
  ACFKHK_RS06605 - 1263175..1263768 (+) 594 WP_392461456.1 DUF1361 domain-containing protein -
  ACFKHK_RS06610 - 1263812..1264072 (-) 261 WP_392461458.1 hypothetical protein -
  ACFKHK_RS06615 - 1264297..1264464 (+) 168 WP_392461460.1 hypothetical protein -
  ACFKHK_RS06620 - 1264824..1264940 (-) 117 Protein_1269 putative holin-like toxin -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 36506.39 Da        Isoelectric Point: 8.5278

>NTDB_id=1059270 ACFKHK_RS06595 WP_392461452.1 1260003..1260941(-) (coiA) [Streptococcus parasuis strain FZ2]
MLIALDEDGQVFNVLENPAPQGRYFCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESTQHLSLKSCLYRWLVNAER
VELEKCLQKLGQIADLFVNDCLVMEVQCSSLPISRLQLRTQAYREAGYLVLWLLGKDLWLKERLTNLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRQPFAKQILSSMTCPMDEDLPRYIAQQLYYKSPKWL
ALQAEAYGRGENLLTKTVFDWFPHIRLPRSAIGFAQIQVNLNSVYQDFDGYYARVKDKRNQVLYPPVIYLKK

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1059270 ACFKHK_RS06595 WP_392461452.1 1260003..1260941(-) (coiA) [Streptococcus parasuis strain FZ2]
ATGTTAATTGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCACAAGGTCGATATTTTTGTCC
AGGTTGTGGAGGCCTAGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCACGTCACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCCACCCAACATCTGTCCCTCAAGTCTTGTCTGTACAGGTGGTTAGTCAATGCCGAACGA
GTTGAACTTGAAAAATGCCTGCAGAAGTTAGGTCAGATAGCGGACTTATTTGTCAATGATTGTTTAGTCATGGAAGTCCA
ATGTTCCAGTCTGCCGATTTCTCGTTTGCAGCTGAGGACGCAAGCCTATCGTGAGGCTGGTTATCTGGTTCTTTGGTTGC
TTGGCAAGGATTTGTGGCTCAAGGAACGACTGACCAATTTGCACAAGCAATTTCTATCTTTTAGTATGAATATGGGTTTT
CACCTCTGGGAATTGGATGACGAGAAAAAAGAATTGCGGCTCCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCAGCCCTTTGCAAAGCAAATCCTAT
CTAGCATGACTTGTCCTATGGATGAGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAAATGGCTC
GCTCTGCAAGCGGAAGCTTATGGACGTGGAGAAAATCTACTGACCAAGACAGTATTTGACTGGTTTCCCCACATCCGACT
GCCCCGCTCTGCCATTGGCTTTGCCCAGATACAGGTAAATTTGAACTCGGTTTACCAGGACTTTGATGGCTATTATGCTA
GGGTCAAAGATAAGAGAAATCAAGTCCTTTATCCACCGGTTATTTACCTTAAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.903

99.359

0.526
  coiA Streptococcus pneumoniae TIGR4

50.968

99.359

0.506
  coiA Streptococcus pneumoniae Rx1

50.968

99.359

0.506
  coiA Streptococcus pneumoniae D39

50.968

99.359

0.506
  coiA Streptococcus pneumoniae R6

50.968

99.359

0.506
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.429

Multiple sequence alignment