Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACFKHK_RS06590 Genome accession   NZ_CP170760
Coordinates   1258122..1259930 (-) Length   602 a.a.
NCBI ID   WP_392461450.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253122..1264930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS06565 - 1254522..1255010 (-) 489 WP_171988745.1 LURP-one-related/scramblase family protein -
  ACFKHK_RS06570 prsA 1255278..1256261 (-) 984 WP_239603999.1 peptidylprolyl isomerase PrsA -
  ACFKHK_RS06575 - 1256324..1257043 (-) 720 WP_174845808.1 O-methyltransferase -
  ACFKHK_RS06580 - 1257118..1257666 (-) 549 WP_171988747.1 DUF6630 family protein -
  ACFKHK_RS06585 - 1257679..1258125 (-) 447 WP_172035738.1 hypothetical protein -
  ACFKHK_RS06590 pepF 1258122..1259930 (-) 1809 WP_392461450.1 oligoendopeptidase F Regulator
  ACFKHK_RS06595 coiA 1260003..1260941 (-) 939 WP_392461452.1 competence protein CoiA Machinery gene
  ACFKHK_RS06600 metG 1261016..1263019 (-) 2004 WP_392461454.1 methionine--tRNA ligase -
  ACFKHK_RS06605 - 1263175..1263768 (+) 594 WP_392461456.1 DUF1361 domain-containing protein -
  ACFKHK_RS06610 - 1263812..1264072 (-) 261 WP_392461458.1 hypothetical protein -
  ACFKHK_RS06615 - 1264297..1264464 (+) 168 WP_392461460.1 hypothetical protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69423.57 Da        Isoelectric Point: 4.5125

>NTDB_id=1059269 ACFKHK_RS06590 WP_392461450.1 1258122..1259930(-) (pepF) [Streptococcus parasuis strain FZ2]
MSKQRHEIEEKYQWDLTTIFPTDEAWEEELASLQAETETAKDFAGHLLDSAKSLLDISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSAFSQAFAFYEPEFMAITEEQLKAFMDEEPTLVQYSHQFEKLLAAKDHVLSQEIEEVLAAT
SEIFESPAETFSVLDNASILFPEIADEEGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNIKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVEAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAYENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLTELEELVEKGVTSVK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1059269 ACFKHK_RS06590 WP_392461450.1 1258122..1259930(-) (pepF) [Streptococcus parasuis strain FZ2]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATATCAGTGGGATTTGACCACTATTTTTCCAACCGATGAAGCTTGGGA
AGAAGAATTAGCTTCATTACAAGCAGAAACAGAAACGGCAAAGGATTTTGCTGGCCACTTGCTTGATTCGGCTAAAAGTC
TCTTAGATATTAGTGAAACACAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAT
CAAGATACTCGTGAAGGTAAATACCAGGAATTTCAGGCTAAAGCCATGGGCTTGTATTCGGCCTTTTCACAGGCTTTTGC
CTTCTATGAACCTGAATTTATGGCTATTACTGAGGAACAGTTGAAAGCATTCATGGATGAAGAGCCAACTTTGGTGCAGT
ACAGCCATCAATTTGAAAAACTCTTAGCAGCTAAGGACCATGTTTTGTCACAAGAAATTGAAGAAGTATTGGCTGCTACG
AGTGAGATTTTCGAATCTCCAGCTGAAACTTTCTCTGTTTTGGATAATGCAAGTATCCTATTTCCTGAAATTGCGGATGA
AGAGGGACATTTGGTACCACTTTCTCACGGTAACTACATCCACTTTATGGAGTCTAAAAACCGCGACGTCCGTCAAGAAG
CATATGAGGCTATGTACGGAACCTATGAGCAGTTTCAGCATACCTACGCTAAGACTCTGCAGTCAAACATTAAGGTCAAT
AACCTGAAAGCACGTTTGCGGAAGTACGACTCAGCCCGTCACGCATCTCTTGCAGCCAATTTTATTCCAGAATCTGTTTA
CGATACATTAGTTGAGGCAGTCAACAAGCACCTCCCGCTCTTGCACCGTTATATCAATTTGCGAAAGAAACTCTTGGGTA
TTGACGACTTGAAGATGTACGATATGTACACGCCATTGTCAGATTTTAGCACCAAGATTTCTTATGAAGATGCACTCAAA
AAATGCCAAGAAACCTTGGAAATCTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTATGAGAATCGTTGGATTGA
CGTCCATGTCAATGAAGGAAAACGCTCAGGAGCATATTCAGGTGGTGCCTACGACACAAACGCCTTCATGCTTCTCAACT
GGCAAGATAACTTGGATAACATGTACACCCTTATCCATGAAACAGGACATTCTCTTCATTCCATGTTGACTCGCAAGACA
CAACCCTATGTCTATGGCCATTATTCACTTTTCTTAGCTGAAATTGCGTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTATTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAACCATTACCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACACAATTTGCCGAGTTTGAACAAGCTATCTATAAGGCAGACCAAGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTATACGGTCAGACTAACGAAAAATACTACGGACTTTCTGCAGAAGAAAACCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTCGCAA
ACAAGATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAGGCTGGTAGCTCAGATTATTCCCTC
AACGTCATTGCAAAAGCTGGTGTAGATATGACCAAGGAAGACTATCTTAACGATGCTTTTAAAGTTTTTGAAGCACGCCT
AACTGAATTGGAAGAGCTTGTTGAAAAAGGGGTTACATCTGTAAAATGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.732

99.336

0.693

Multiple sequence alignment