Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   ACFKHK_RS00405 Genome accession   NZ_CP170760
Coordinates   69111..70013 (+) Length   300 a.a.
NCBI ID   WP_174846494.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 64111..75013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHK_RS00375 - 64399..65145 (-) 747 WP_392462188.1 amino acid ABC transporter ATP-binding protein -
  ACFKHK_RS00380 - 65150..65827 (-) 678 WP_024392848.1 amino acid ABC transporter permease -
  ACFKHK_RS00385 - 65808..66467 (-) 660 WP_239604822.1 amino acid ABC transporter permease -
  ACFKHK_RS00390 ruvB 66595..67593 (+) 999 WP_171989019.1 Holliday junction branch migration DNA helicase RuvB -
  ACFKHK_RS00395 - 67593..68339 (+) 747 WP_171989018.1 GNAT family N-acetyltransferase -
  ACFKHK_RS00400 - 68341..68955 (+) 615 WP_277940983.1 HAD-IA family hydrolase -
  ACFKHK_RS00405 comR 69111..70013 (+) 903 WP_174846494.1 transcriptional regulator Regulator
  ACFKHK_RS00410 - 70221..71441 (+) 1221 WP_277940982.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACFKHK_RS00415 - 71625..73145 (+) 1521 WP_392462191.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35893.83 Da        Isoelectric Point: 4.6406

>NTDB_id=1059243 ACFKHK_RS00405 WP_174846494.1 69111..70013(+) (comR) [Streptococcus parasuis strain FZ2]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRNQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRDRDTDATIYHYFSSLVTHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1059243 ACFKHK_RS00405 WP_174846494.1 69111..70013(+) (comR) [Streptococcus parasuis strain FZ2]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCAATCAAATGTTGACAATCATTTACGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCGACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAGATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TGTTACCCACCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGAGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACAGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

61.873

99.667

0.617
  comR Streptococcus suis 05ZYH33

61.873

99.667

0.617
  comR Streptococcus suis D9

56.478

100

0.567
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.215

96.333

0.407
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39

Multiple sequence alignment