Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACFKHJ_RS00600 Genome accession   NZ_CP170759
Coordinates   98807..100957 (+) Length   716 a.a.
NCBI ID   WP_239604429.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 93807..105957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS00555 - 94467..95813 (+) 1347 WP_239604426.1 sensor histidine kinase -
  ACFKHJ_RS00560 - 95942..96067 (-) 126 WP_216806233.1 bacteriocin -
  ACFKHJ_RS00565 - 96269..97057 (+) 789 WP_239604427.1 ParA family protein -
  ACFKHJ_RS00570 - 97070..97294 (+) 225 WP_024379520.1 hypothetical protein -
  ACFKHJ_RS00575 - 97540..97683 (+) 144 WP_153594002.1 bacteriocin -
  ACFKHJ_RS00580 - 97694..97819 (+) 126 WP_105129977.1 bacteriocin -
  ACFKHJ_RS00585 - 97998..98186 (+) 189 WP_029176448.1 hypothetical protein -
  ACFKHJ_RS00590 - 98207..98398 (+) 192 WP_029176447.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  ACFKHJ_RS00595 - 98426..98635 (+) 210 WP_172089147.1 hypothetical protein -
  ACFKHJ_RS00600 comA 98807..100957 (+) 2151 WP_239604429.1 peptide cleavage/export ABC transporter ComA Regulator
  ACFKHJ_RS00605 - 100967..102328 (+) 1362 WP_239604430.1 bacteriocin secretion accessory protein -
  ACFKHJ_RS00610 - 102677..103018 (+) 342 WP_239604431.1 hypothetical protein -
  ACFKHJ_RS00615 - 103031..104602 (-) 1572 Protein_100 IS3 family transposase -
  ACFKHJ_RS00620 - 104677..105336 (-) 660 WP_392452723.1 metal-dependent transcriptional regulator -

Sequence

Protein


Download         Length: 716 a.a.        Molecular weight: 80665.65 Da        Isoelectric Point: 6.9797

>NTDB_id=1059189 ACFKHJ_RS00600 WP_239604429.1 98807..100957(+) (comA) [Streptococcus parasuis strain FZ1]
MRFKKKHYRAQVDTRDCGVASLAMVFGFYGSYYSLATLRELAKTTQEGTTAFGLVKVAEGEGFETRAIRADMTLFDEDII
YPFIAHVVKNGNLMHYYVVTGCDKKSIHIADPDPTVKMIKMPRERFEEEWTGVSLFIAPTPSYKVHKEKKDSLLSFVPIL
ARQRGLILNIVIATLIVTIINIVGSYYLQSIIDTYIPEQVKNTLSIVSVGLVIVYILQQLISYAQEYLLLVLGQRLSIDV
ILSYIKHVFHLPMSFFATRRTGEIVSRFTDANSIIDALASTILSVFLDVSIIIIVSIVLFSQNINLFFISLLALPIYTVI
ILSFMKPFEKMNQETMESNAVLSSSIIEDINGIETIKSLTSERQRYQKIDKEFIDYLKKSFAYGRAESIQKTLKKLAQLL
LNVAVLWMGANLVMDNKMTLGQLITYNSLLVYFTNPLENIINLQTKLQTAKVANNRLNEVYLVKSEFEEQKTVHDLSHFK
GNLTFNSVSYKYGYGRDVLSDINLTLKAGSKVSFVGISGSGKTTLAKMLVNFFSPSKGEILLDDVNLEDINKESLRRYIN
YLPQQPYVFNGTILDNLLLGAKEGTTQEDISRAVQIAEIKSDIESMPLNYQTELTSDGVGISGGQRQRIALARALLTDSP
VLILDEATSSLDVLTEKKIIDNLMELDKTLIFIAHRLTISERTEHIVVLDKGKIIEEGTHQDLLQKQGFYAHLVNS

Nucleotide


Download         Length: 2151 bp        

>NTDB_id=1059189 ACFKHJ_RS00600 WP_239604429.1 98807..100957(+) (comA) [Streptococcus parasuis strain FZ1]
ATGCGTTTTAAGAAGAAACATTATCGTGCTCAAGTAGATACTAGGGACTGCGGTGTTGCATCTCTAGCAATGGTTTTTGG
TTTCTATGGGTCTTATTACTCATTGGCCACTTTGCGTGAGTTAGCGAAGACTACACAAGAGGGGACAACAGCTTTTGGAT
TGGTCAAAGTTGCTGAAGGTGAAGGATTTGAAACTCGAGCAATCCGTGCAGATATGACTCTTTTTGATGAGGATATCATC
TATCCTTTTATTGCTCATGTAGTCAAAAATGGGAATTTGATGCACTATTATGTCGTAACTGGATGTGATAAAAAGTCAAT
CCATATTGCCGATCCAGATCCGACAGTTAAGATGATTAAGATGCCACGTGAGCGATTTGAAGAGGAGTGGACAGGAGTAT
CTCTTTTTATTGCTCCCACTCCCAGCTATAAGGTTCACAAAGAAAAGAAAGATAGCTTATTGTCTTTTGTCCCTATCCTT
GCTAGACAGAGGGGACTGATATTAAATATTGTCATTGCCACTCTTATAGTGACTATAATCAATATTGTTGGTTCATACTA
TCTACAATCGATTATAGATACCTATATTCCTGAACAGGTAAAAAATACTCTAAGCATTGTGTCAGTTGGATTAGTTATCG
TCTATATTCTTCAACAACTGATTTCATATGCTCAAGAGTACTTATTATTGGTCCTGGGGCAGAGATTATCAATTGATGTT
ATTTTGTCTTATATCAAGCATGTTTTTCACTTGCCGATGTCTTTCTTTGCAACAAGAAGAACAGGGGAAATCGTTTCACG
TTTCACTGATGCTAATTCAATCATCGATGCTTTAGCAAGTACGATTTTATCGGTTTTCTTAGATGTTTCGATTATCATCA
TTGTTTCAATTGTTTTGTTTTCTCAAAACATTAACCTATTTTTCATTAGCTTACTTGCATTGCCAATCTATACCGTGATT
ATCCTATCTTTCATGAAACCATTCGAAAAAATGAATCAAGAAACAATGGAATCTAATGCGGTCCTATCATCTTCAATCAT
TGAAGATATTAACGGCATTGAGACAATCAAGTCCTTAACAAGTGAACGTCAACGTTATCAAAAGATTGATAAGGAATTTA
TTGATTATCTGAAGAAGTCATTTGCTTACGGTAGAGCTGAGAGCATTCAGAAAACGCTAAAAAAATTGGCTCAGTTATTG
CTGAATGTTGCGGTATTATGGATGGGAGCAAATCTTGTTATGGATAATAAGATGACATTAGGTCAGCTTATTACCTATAA
CTCTCTATTGGTTTACTTCACAAACCCTCTGGAAAATATTATTAACCTTCAGACGAAGTTACAAACTGCTAAAGTTGCAA
ATAACCGCCTAAATGAAGTATACCTGGTAAAATCTGAATTTGAAGAGCAAAAAACAGTTCATGATTTGAGCCATTTCAAA
GGGAATCTAACATTCAACAGTGTCAGCTATAAGTATGGATATGGTAGAGATGTTCTTAGTGACATTAATCTCACATTGAA
AGCAGGTAGTAAGGTGTCATTTGTAGGAATTTCAGGTTCAGGAAAAACTACATTGGCCAAGATGCTTGTTAACTTCTTTA
GTCCATCAAAGGGTGAGATTTTATTAGATGATGTGAATCTAGAAGACATTAACAAAGAAAGTCTTCGAAGATATATCAAT
TATCTACCTCAACAACCGTATGTTTTTAATGGTACTATCCTGGATAATCTTTTGCTAGGAGCAAAAGAGGGAACGACTCA
GGAAGATATTTCTAGGGCAGTTCAAATCGCAGAAATCAAGTCCGATATAGAATCTATGCCGTTGAACTATCAAACAGAAT
TAACGTCAGATGGTGTTGGTATTTCAGGAGGTCAGCGTCAGAGGATTGCCTTGGCTAGAGCCTTATTGACGGATTCTCCA
GTATTGATTTTAGATGAGGCAACCAGTAGCTTAGATGTATTGACTGAGAAGAAAATCATAGATAATCTTATGGAATTAGA
TAAGACATTGATTTTCATTGCTCATAGATTAACAATTTCTGAAAGAACGGAGCATATTGTTGTCCTTGATAAAGGTAAAA
TTATTGAAGAAGGAACTCATCAAGATTTGCTACAGAAACAAGGATTTTATGCTCATTTAGTAAATAGTTAG

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(6-141)

ABC transporter transmembrane region (ABC_membrane)

(168-437)

ABC transporter (ABC_tran)

(499-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

81.311

100

0.814
  comA Streptococcus pneumoniae Rx1

81.032

100

0.811
  comA Streptococcus pneumoniae D39

81.032

100

0.811
  comA Streptococcus pneumoniae R6

81.032

100

0.811
  comA Streptococcus mitis SK321

80.753

100

0.809
  comA Streptococcus pneumoniae TIGR4

80.753

100

0.809
  comA Streptococcus gordonii str. Challis substr. CH1

75.314

100

0.754
  comA/nlmT Streptococcus mutans UA159

63.319

100

0.634

Multiple sequence alignment