Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   ACFKHJ_RS00410 Genome accession   NZ_CP170759
Coordinates   67883..68785 (+) Length   300 a.a.
NCBI ID   WP_239604412.1    Uniprot ID   -
Organism   Streptococcus parasuis strain FZ1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 62883..73785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFKHJ_RS00380 - 63171..63917 (-) 747 WP_172036451.1 amino acid ABC transporter ATP-binding protein -
  ACFKHJ_RS00385 - 63922..64599 (-) 678 WP_171989020.1 amino acid ABC transporter permease -
  ACFKHJ_RS00390 - 64580..65239 (-) 660 WP_274505914.1 amino acid ABC transporter permease -
  ACFKHJ_RS00395 ruvB 65367..66365 (+) 999 WP_274505492.1 Holliday junction branch migration DNA helicase RuvB -
  ACFKHJ_RS00400 - 66365..67111 (+) 747 WP_239604411.1 GNAT family N-acetyltransferase -
  ACFKHJ_RS00405 - 67113..67727 (+) 615 WP_171989017.1 HAD-IA family hydrolase -
  ACFKHJ_RS00410 comR 67883..68785 (+) 903 WP_239604412.1 transcriptional regulator Regulator
  ACFKHJ_RS00415 - 68993..70213 (+) 1221 WP_392452717.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFKHJ_RS00420 - 70397..71917 (+) 1521 WP_392452718.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35908.84 Da        Isoelectric Point: 4.6012

>NTDB_id=1059184 ACFKHJ_RS00410 WP_239604412.1 67883..68785(+) (comR) [Streptococcus parasuis strain FZ1]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRDQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRDRDTDATIYHYFSSLITHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1059184 ACFKHJ_RS00410 WP_239604412.1 67883..68785(+) (comR) [Streptococcus parasuis strain FZ1]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCGATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCTACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAGATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TATTACCCACCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGAGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACAGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

62.542

99.667

0.623
  comR Streptococcus suis 05ZYH33

62.542

99.667

0.623
  comR Streptococcus suis D9

57.143

100

0.573
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.869

96.333

0.403
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39

Multiple sequence alignment