Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACF3DW_RS07395 Genome accession   NZ_CP170746
Coordinates   1672416..1672781 (+) Length   121 a.a.
NCBI ID   WP_016876361.1    Uniprot ID   A0A3S0XTU6
Organism   Chlorogloeopsis fritschii PCC 6912     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667416..1677781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF3DW_RS07385 (ACF3DW_07385) hmpF 1668582..1670324 (-) 1743 WP_392408380.1 pilus motility taxis protein HmpF -
  ACF3DW_RS07390 (ACF3DW_07390) - 1671045..1672286 (+) 1242 WP_016876360.1 response regulator -
  ACF3DW_RS07395 (ACF3DW_07395) pilH 1672416..1672781 (+) 366 WP_016876361.1 response regulator transcription factor Machinery gene
  ACF3DW_RS07400 (ACF3DW_07400) - 1672795..1673325 (+) 531 WP_026087582.1 chemotaxis protein CheW -
  ACF3DW_RS07405 (ACF3DW_07405) - 1673342..1676299 (+) 2958 WP_392408383.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13324.44 Da        Isoelectric Point: 4.8604

>NTDB_id=1059124 ACF3DW_RS07395 WP_016876361.1 1672416..1672781(+) (pilH) [Chlorogloeopsis fritschii PCC 6912]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGLEALEAIQTAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=1059124 ACF3DW_RS07395 WP_016876361.1 1672416..1672781(+) (pilH) [Chlorogloeopsis fritschii PCC 6912]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATTGCGCAAAGGGAAATGATTACAGATCTCCTGAAAGCGAGTGGCTTAAC
AGTAACCCACGCCAGTGACGGATTAGAAGCGTTGGAAGCAATTCAAACTGCTCCGCCCGATTTAGTGGTATTGGATATCG
TTATGCCTCGGATGAATGGCTATGAAGTGTGCCGCCGCTTAAAGTCTGATCCCAAAACTCAAAATGTTCCTGTAGTGATG
TGTTCTTCTAAAGGCGAAGAATTTGATCGCTATTGGGGGATGAAGCAAGGTGCGGATGCCTACATAGCCAAACCCTTCCA
ACCAACAGAATTGGTGGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S0XTU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment