Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFE3T_RS20415 Genome accession   NZ_CP170742
Coordinates   4472691..4474205 (+) Length   504 a.a.
NCBI ID   WP_392400221.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain XN-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4467691..4479205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFE3T_RS20400 (ACFE3T_20400) - 4469419..4470360 (-) 942 WP_059111903.1 branched-chain amino acid transaminase -
  ACFE3T_RS20405 (ACFE3T_20405) ilvM 4470373..4470663 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  ACFE3T_RS20410 (ACFE3T_20410) ilvG 4470660..4472306 (-) 1647 WP_392400220.1 acetolactate synthase 2 catalytic subunit -
  ACFE3T_RS20415 (ACFE3T_20415) comM 4472691..4474205 (+) 1515 WP_392400221.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFE3T_RS20420 (ACFE3T_20420) - 4474342..4475241 (+) 900 WP_392400222.1 acyltransferase -
  ACFE3T_RS20425 (ACFE3T_20425) - 4475387..4475884 (-) 498 WP_392400223.1 DUF523 domain-containing protein -
  ACFE3T_RS20430 (ACFE3T_20430) - 4475881..4476531 (-) 651 WP_011898224.1 NUDIX hydrolase -
  ACFE3T_RS20435 (ACFE3T_20435) - 4476606..4477241 (+) 636 WP_392400224.1 nicotinamidase -
  ACFE3T_RS20440 (ACFE3T_20440) pncB 4477343..4478521 (+) 1179 WP_392400225.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54693.62 Da        Isoelectric Point: 7.4493

>NTDB_id=1059096 ACFE3T_RS20415 WP_392400221.1 4472691..4474205(+) (comM) [Aeromonas salmonicida strain XN-7]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ETSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1059096 ACFE3T_RS20415 WP_392400221.1 4472691..4474205(+) (comM) [Aeromonas salmonicida strain XN-7]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGACCTGCCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGGC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACAGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCTCTGCCGGAGCCCCAGACCACGGACTCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAATCTGC
TGTTCATCGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCATCACAGTGCCTCCGCCGTGGCTCTGGTGGGTGGTGGCAGCCACCCAAGACCGGGGGAGATCTCGTTAGCCC
ACAATGGTGTGCTCTTTCTCGACGAGTTGCCGGAGTTCGAACGCAAGGTGCTGGACTCACTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTCCTCGATCGCTTCGATCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGGAGTCTCACCGGCAAGGCGGAGCGGGGG
GAGACGAGTCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGAATGCTGAGCCGTAATGGCAAGCTCAACAATCT
GCTGGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAGC
TGGGCCTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCGGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

62.948

99.603

0.627
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.972

100

0.464

Multiple sequence alignment