Detailed information NTG1058890

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: ACFCQI_RS12060
• Genome accession: NZ_CP170722
• Coordinates: 2700103..2701272 (+)
• Length: 389 a.a.
• NCBI ID: WP_136256917.1
• Uniprot ID: A0AB74ULL8
• Organism: Rhodanobacter sp. FW102-FHT14D06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2695103..2706272

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFCQI_RS12045 (ACFCQI_12045)	-	2697178..2697753 (-)	576	WP_395116989.1	YggT family protein	-
ACFCQI_RS12050 (ACFCQI_12050)	proC	2697750..2698574 (-)	825	WP_395116991.1	pyrroline-5-carboxylate reductase	-
ACFCQI_RS12055 (ACFCQI_12055)	pilT	2698923..2699948 (+)	1026	WP_395116993.1	type IV pilus twitching motility protein PilT	Machinery gene
ACFCQI_RS12060 (ACFCQI_12060)	pilU	2700103..2701272 (+)	1170	WP_136256917.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
ACFCQI_RS12065 (ACFCQI_12065)	-	2701341..2701751 (-)	411	WP_395116995.1	BON domain-containing protein	-
ACFCQI_RS12070 (ACFCQI_12070)	-	2702001..2703785 (-)	1785	WP_395116997.1	hypothetical protein	-
ACFCQI_RS12075 (ACFCQI_12075)	-	2704062..2704988 (-)	927	WP_395116999.1	aspartate carbamoyltransferase catalytic subunit	-
ACFCQI_RS12080 (ACFCQI_12080)	ruvX	2705021..2705470 (-)	450	WP_395117001.1	Holliday junction resolvase RuvX	-
ACFCQI_RS12085 (ACFCQI_12085)	-	2705467..2706036 (-)	570	WP_395117003.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 389 a.a.
• Molecular weight: 43258.75 Da
• Isoelectric Point: 6.6350

>NTDB_id=1058890 ACFCQI_RS12060 WP_136256917.1 2700103..2701272(+) (pilU) [Rhodanobacter sp. FW102-FHT14D06]
MSDFDFTSFLKLMVHKKASDLFITAGVAPSMKVQGRIVPITQSPLSVQQARDMVLNVMTPGQREEFEKTHECQFAISAQG
VGRFRVSCFYQRNCVGMVLRRIESKIPTTEELNLPPVIKQLAMTKRGIIIFVGATGSGKSTSLAAMVGYRNLNSTGHIIT
IEDPIEYVHKHEGCIITQREVGIDTDSWDAALKNTLRQAPDVIMIGEIRTREGMDHAIAFAETGHLVLCTLHANNANQAM
DRILHFFPEDRRQQLLMDLSLNLKGIVAQMLIPTPDGKARRVAVEVLLGTPLAQDYIRQGEIHKLKELMKESTLLGMKTF
DQALVELYHAGEISYEDALRYADSSNEVRLRIKLAQGGDAHTLSQGLDGVELEEDPNDKSFGGSNLLNR

Nucleotide

• Length: 1170 bp

>NTDB_id=1058890 ACFCQI_RS12060 WP_136256917.1 2700103..2701272(+) (pilU) [Rhodanobacter sp. FW102-FHT14D06]
ATGAGCGACTTCGATTTCACCTCGTTCCTGAAACTGATGGTGCACAAGAAGGCATCGGATCTTTTCATCACGGCCGGCGT
GGCGCCGTCGATGAAGGTGCAGGGGCGCATCGTGCCGATCACGCAGAGCCCGCTCAGCGTGCAGCAGGCGCGCGACATGG
TGCTCAACGTGATGACGCCGGGCCAGCGCGAGGAGTTCGAGAAGACCCACGAGTGCCAGTTCGCAATTTCCGCGCAGGGC
GTGGGCCGTTTCCGCGTGTCGTGCTTCTACCAGCGCAACTGCGTGGGCATGGTGTTGCGCCGGATCGAGTCGAAGATCCC
CACCACCGAGGAGCTGAACCTGCCGCCGGTGATCAAGCAGCTGGCGATGACCAAGCGCGGCATCATCATCTTCGTCGGCG
CCACCGGTTCGGGCAAATCGACCTCGCTGGCGGCGATGGTCGGCTACCGCAACCTCAACTCGACAGGGCACATCATCACG
ATCGAGGACCCGATCGAGTACGTGCACAAGCACGAGGGCTGCATCATCACCCAGCGCGAGGTCGGCATCGACACCGACAG
CTGGGACGCTGCCCTGAAGAACACCCTGCGCCAGGCACCCGACGTGATCATGATCGGCGAAATCCGCACCCGCGAGGGCA
TGGACCACGCCATCGCGTTCGCCGAGACCGGCCACCTGGTGCTGTGCACGCTGCATGCGAACAACGCCAACCAGGCGATG
GACCGCATCCTGCATTTCTTCCCGGAGGATCGCCGCCAGCAGTTGCTGATGGACCTGTCGCTGAACCTCAAGGGCATCGT
GGCGCAGATGCTGATTCCGACGCCGGACGGCAAGGCGCGTCGGGTCGCGGTGGAAGTGCTGCTGGGCACGCCGCTGGCGC
AGGACTACATCCGCCAGGGCGAGATCCACAAGCTGAAGGAGCTGATGAAGGAGTCGACCCTGCTCGGCATGAAGACCTTC
GACCAGGCGCTGGTCGAGCTCTACCACGCCGGCGAGATCAGCTACGAGGATGCGCTGCGCTACGCGGACAGCTCCAACGA
GGTGCGCCTGCGCATCAAGCTGGCCCAGGGTGGCGACGCGCACACCTTGTCGCAGGGGCTGGACGGCGTCGAACTGGAAG
AAGACCCCAACGACAAGAGCTTCGGCGGCAGCAACCTGCTCAACCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (117-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	66.404	97.943	0.65
pilU	Acinetobacter baylyi ADP1	63.483	91.517	0.581
pilU	Vibrio cholerae strain A1552	53.09	91.517	0.486
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.247	95.63	0.375