Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFCQI_RS06040 Genome accession   NZ_CP170722
Coordinates   1311535..1313028 (-) Length   497 a.a.
NCBI ID   WP_395120508.1    Uniprot ID   A0AB74UPW8
Organism   Rhodanobacter sp. FW102-FHT14D06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1306535..1318028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCQI_RS06030 (ACFCQI_06030) aceA 1308187..1309482 (+) 1296 WP_395120505.1 isocitrate lyase -
  ACFCQI_RS06035 (ACFCQI_06035) - 1309582..1311369 (-) 1788 WP_395120506.1 cation:proton antiporter -
  ACFCQI_RS06040 (ACFCQI_06040) comM 1311535..1313028 (-) 1494 WP_395120508.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFCQI_RS06045 (ACFCQI_06045) - 1313177..1313440 (-) 264 WP_395121277.1 accessory factor UbiK family protein -
  ACFCQI_RS06050 (ACFCQI_06050) glnK 1313627..1313965 (+) 339 WP_136259205.1 P-II family nitrogen regulator -
  ACFCQI_RS06055 (ACFCQI_06055) - 1314424..1316853 (+) 2430 WP_395120509.1 ribonucleoside-diphosphate reductase subunit alpha -
  ACFCQI_RS06060 (ACFCQI_06060) - 1316972..1317268 (-) 297 WP_395120511.1 GIY-YIG nuclease family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53674.59 Da        Isoelectric Point: 7.6687

>NTDB_id=1058880 ACFCQI_RS06040 WP_395120508.1 1311535..1313028(-) (comM) [Rhodanobacter sp. FW102-FHT14D06]
MSLAVTLSRAQEGIAAPQVMVEVHLSGGLPCTNIVGLPEAAVREARDRVRVAIQNTAFEYPNRRVTVNLAPAELPKDGGR
FDLSIALGILAASGQVPREKLDDCEFLGELALTGSLRGISGVLPALLRARARDRRVVVPRENAAEAALVPDVDVRVAETL
AEVCGWLRGAHDLSAPVGIPSDGGAHDGPDLADVRGQLQARRALEIAAVGGHHLLLVGPPGTGKTMLAERLPGILPPLSE
SEALETCAVLSVAGQVTDPVRWRRRPFRAPHHTASAVALVGGGSFPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPME
SGHIMISRAARQSTFPAQFQLVAAMNPCPCGYAGEPRCQCTPDQVQRYRARISGPLLDRIDLCVQVPPVALAELGTPRNA
RDEDSATVRVRVLHARRHALMRAGRPNAEISTRELERDCALGPAERRWFEQALERLGLSARAYHRVLRVARTIADLDGGA
ALLEREHLAEALQYRRV

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=1058880 ACFCQI_RS06040 WP_395120508.1 1311535..1313028(-) (comM) [Rhodanobacter sp. FW102-FHT14D06]
ATGAGCCTCGCCGTCACCCTCAGCCGTGCCCAGGAAGGCATCGCTGCCCCGCAGGTGATGGTCGAGGTGCATCTCTCCGG
CGGCTTGCCCTGCACCAACATCGTCGGCCTGCCCGAGGCCGCCGTGCGCGAGGCACGCGACCGCGTGCGCGTGGCAATCC
AGAACACTGCCTTCGAGTATCCCAACCGGCGCGTCACGGTGAACCTGGCGCCGGCCGAACTGCCCAAGGATGGCGGGCGT
TTCGATCTCTCCATTGCACTGGGCATCCTCGCCGCCAGCGGCCAGGTACCGCGCGAGAAACTGGATGACTGCGAGTTCCT
CGGCGAGCTGGCGCTGACCGGCTCGCTGCGCGGCATCTCCGGCGTGCTGCCGGCGCTGCTGCGCGCCCGCGCGCGCGACC
GTCGGGTGGTGGTGCCGCGCGAGAACGCGGCCGAGGCCGCGCTGGTGCCGGACGTCGACGTGCGCGTCGCCGAGACCCTC
GCCGAAGTCTGCGGCTGGCTGCGCGGTGCGCACGACCTGTCCGCGCCGGTGGGCATCCCCAGCGATGGCGGCGCACATGA
CGGGCCGGACCTGGCCGACGTGCGCGGGCAGTTGCAGGCACGCCGCGCGCTGGAGATCGCCGCGGTCGGTGGCCATCACC
TGCTGCTGGTCGGTCCGCCGGGCACCGGCAAGACCATGCTGGCCGAACGCCTGCCCGGCATCCTGCCGCCGCTGTCGGAA
TCGGAGGCGCTGGAGACCTGCGCCGTGTTGTCGGTCGCGGGCCAGGTCACCGATCCCGTGCGCTGGCGCCGGCGCCCGTT
CCGCGCGCCGCACCATACCGCTTCGGCGGTGGCGCTGGTCGGCGGCGGCTCGTTTCCTCGTCCGGGCGAGATCTCGCTGG
CGCACAACGGCGTGTTGTTCCTCGACGAGCTTCCCGAGTTCAGCCGGCACGTGCTGGAGGTGCTGCGCGAGCCGATGGAA
TCGGGCCATATCATGATTTCCCGGGCGGCGCGGCAATCGACCTTTCCTGCCCAGTTCCAGCTGGTCGCGGCGATGAATCC
GTGCCCGTGCGGCTATGCCGGCGAGCCGCGCTGCCAGTGCACGCCCGACCAGGTGCAGCGTTACCGCGCACGTATTTCCG
GGCCGCTGCTGGATCGCATCGACCTGTGCGTGCAAGTGCCGCCGGTGGCGCTGGCCGAACTGGGCACGCCCCGCAACGCG
CGCGACGAGGACTCCGCCACCGTTCGCGTTCGCGTGCTCCATGCCCGCCGCCACGCACTGATGCGCGCAGGCCGGCCGAA
CGCGGAGATCAGCACGCGCGAACTGGAGCGCGATTGTGCGCTGGGGCCGGCGGAGCGGCGCTGGTTCGAACAGGCACTCG
AGCGGCTGGGCCTCTCCGCGCGCGCCTATCATCGGGTGCTGCGCGTCGCCCGCACGATCGCCGACCTCGACGGCGGCGCC
GCCTTGCTCGAACGCGAGCACCTGGCCGAAGCCCTGCAGTACCGCAGGGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.747

99.598

0.545
  comM Haemophilus influenzae Rd KW20

52.894

100

0.533
  comM Vibrio campbellii strain DS40M4

53.535

99.598

0.533
  comM Glaesserella parasuis strain SC1401

52.906

100

0.531
  comM Legionella pneumophila str. Paris

51.004

100

0.511
  comM Legionella pneumophila strain ERS1305867

51.004

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.554

100

0.453

Multiple sequence alignment