Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   AABA08_RS02320 Genome accession   NZ_AP028602
Coordinates   464719..465450 (+) Length   243 a.a.
NCBI ID   WP_000889956.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 459719..470450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS02295 (TKY092604_04430) dnaK 459974..461797 (+) 1824 WP_000034678.1 molecular chaperone DnaK -
  AABA08_RS02300 (TKY092604_04440) - 461799..462155 (+) 357 WP_000114435.1 hypothetical protein -
  AABA08_RS02305 (TKY092604_04450) dnaJ 462428..463564 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  AABA08_RS02310 (TKY092604_04460) - 463944..464231 (-) 288 WP_000777753.1 hypothetical protein -
  AABA08_RS02315 (TKY092604_04470) - 464241..464651 (-) 411 WP_001278322.1 HIT family protein -
  AABA08_RS02320 (TKY092604_04480) pptA 464719..465450 (+) 732 WP_000889956.1 ABC transporter ATP-binding protein Regulator
  AABA08_RS02325 (TKY092604_04490) - 465447..466496 (+) 1050 WP_000653754.1 ABC transporter permease -
  AABA08_RS02330 (TKY092604_04500) - 466664..466993 (-) 330 WP_000132575.1 hypothetical protein -
  AABA08_RS02335 (TKY092604_04510) - 467269..467607 (+) 339 WP_000682124.1 LytTR family DNA-binding domain-containing protein -
  AABA08_RS02340 (TKY092604_04520) comE/blpR 467612..468349 (+) 738 WP_001219133.1 response regulator transcription factor Regulator
  AABA08_RS02345 (TKY092604_04530) - 468363..469703 (+) 1341 WP_001017640.1 sensor histidine kinase -
  AABA08_RS02350 (TKY092604_04540) blpC 469774..469902 (-) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27111.62 Da        Isoelectric Point: 4.7848

>NTDB_id=105869 AABA08_RS02320 WP_000889956.1 464719..465450(+) (pptA) [Streptococcus pneumoniae strain PF2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=105869 AABA08_RS02320 WP_000889956.1 464719..465450(+) (pptA) [Streptococcus pneumoniae strain PF2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTCTTGAAAGATGTGTCTTTTACTGTTGAAAGTGG
GCAGTTGGTTGGTTTGATTGGTCTCAATGGTGCTGGGAAATCGACGACGATTAATGAGATTATCGGTCTGTTGACACCTT
ATAGTGGTTCCATCAATATCAATGGCCTGACCCTGCAAGAAGATGCGACTAGTTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAGAA
AGTGGCTTTTGAGCGAGTAGAGCCCTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTTCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTAGATCCGAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTGGATCCGCTGGCGATTGCAGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTTAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTTATTCTTCATAAGGGAGAGGTGCGTGCCAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment