Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O1Q83_RS12180 Genome accession   NZ_CP170642
Coordinates   2484696..2486231 (+) Length   511 a.a.
NCBI ID   WP_132300020.1    Uniprot ID   A0A4R1L0D1
Organism   Lonepinella koalarum strain ACM3666     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2479696..2491231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q83_RS12160 (O1Q83_02394) araH 2480092..2481060 (-) 969 WP_132300012.1 L-arabinose ABC transporter permease AraH -
  O1Q83_RS12165 (O1Q83_02395) araG 2481079..2482566 (-) 1488 WP_132300014.1 L-arabinose ABC transporter ATP-binding protein AraG -
  O1Q83_RS12170 (O1Q83_02396) - 2482660..2483673 (-) 1014 WP_132300016.1 arabinose ABC transporter substrate-binding protein -
  O1Q83_RS12175 (O1Q83_02397) yihA 2483973..2484599 (+) 627 WP_243640837.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  O1Q83_RS12180 (O1Q83_02398) comM 2484696..2486231 (+) 1536 WP_132300020.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O1Q83_RS12185 (O1Q83_02399) - 2486329..2486823 (-) 495 WP_132300022.1 YfbU family protein -
  O1Q83_RS12190 (O1Q83_02400) - 2486849..2487598 (-) 750 WP_132300024.1 VacJ family lipoprotein -
  O1Q83_RS12195 (O1Q83_02401) carA 2487863..2489002 (+) 1140 WP_132300026.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  O1Q83_RS12200 (O1Q83_02402) - 2489012..2489668 (+) 657 WP_132300028.1 Fic family protein -
  O1Q83_RS12205 (O1Q83_02403) - 2489661..2490296 (+) 636 WP_132300030.1 LysE/ArgO family amino acid transporter -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56160.58 Da        Isoelectric Point: 9.7614

>NTDB_id=1058301 O1Q83_RS12180 WP_132300020.1 2484696..2486231(+) (comM) [Lonepinella koalarum strain ACM3666]
MSLAIVYSRASIGVQASLVTIEVHISNGKPNFVLVGLPEKTVKEAQDRVRSALINAQFKYPPKRITVNLAPADLPKEGGR
FDLPIALGILAASGQINAEQLRQFEFLGELALTGNLRGVQGVIPAILAAQKAKRTMIIAPQNANEASLISEHDSYYANSL
LEVVQFLDNQLNLPTASQMADQIRSNAKQSAVQNSKDLTDIIGQHHAKRALIIAAAGQHNLLLLGPPGTGKTMLASRLTD
LLPEMSDQEAIETASVTSLIQNELNFANWKKRPFRSPHHSASLPALVGGGSIPKPGEISLAHNGILFLDELPEFERKVLD
ALRQPLESGEIVISRATAKIQFPAKFQLVAAMNPSPTGHYQGSHNRTSPQQIIRYLNRLSGPFLDRFDLSIEVPLLPQGA
LQSQQDRGESSEQVRLKIVKVRERQFARQGKVNAHLTSKEIERYCPLLEKDAIFLENALTKLGLSVRAYHRILKVSRTIA
DLAESEQITQAHLAEALGYRTMDRLLLKLHE

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1058301 O1Q83_RS12180 WP_132300020.1 2484696..2486231(+) (comM) [Lonepinella koalarum strain ACM3666]
ATGTCGTTAGCCATTGTTTATAGCCGTGCATCTATCGGGGTACAAGCCTCCCTTGTGACCATCGAAGTCCATATTAGCAA
TGGTAAACCAAATTTTGTGTTGGTGGGATTACCAGAAAAAACCGTGAAAGAAGCACAGGATCGCGTGAGAAGTGCCTTGA
TTAATGCACAATTTAAATATCCACCAAAACGCATTACGGTTAATCTTGCCCCAGCAGATTTACCTAAAGAGGGGGGACGT
TTTGATTTGCCGATTGCGTTGGGGATTTTGGCAGCATCAGGGCAAATTAATGCGGAACAATTACGTCAATTTGAATTTCT
CGGTGAACTGGCATTAACAGGTAATTTACGTGGTGTACAAGGAGTTATTCCTGCTATTTTAGCGGCTCAAAAAGCAAAAA
GAACCATGATTATTGCCCCACAAAATGCCAATGAGGCCTCTCTCATCTCAGAACACGACAGTTATTATGCAAATTCACTG
TTAGAAGTGGTACAATTTCTCGATAATCAATTAAATTTGCCAACGGCGAGCCAAATGGCAGATCAAATTAGGTCAAATGC
CAAGCAAAGTGCGGTGCAAAATAGTAAAGATTTAACCGATATTATCGGGCAACATCATGCCAAACGAGCCTTAATCATTG
CCGCTGCTGGACAGCATAACTTACTTTTATTAGGTCCACCGGGGACAGGCAAAACCATGCTTGCCAGTCGATTAACCGAT
CTCTTACCCGAAATGAGTGATCAAGAAGCCATAGAAACCGCCTCCGTCACAAGCCTGATTCAAAATGAACTGAATTTTGC
CAATTGGAAGAAACGTCCATTCCGTAGCCCGCATCATAGTGCATCTTTGCCCGCGTTAGTGGGAGGGGGATCGATCCCAA
AACCAGGTGAAATTTCATTAGCTCACAATGGCATTCTTTTTCTTGATGAGTTGCCCGAGTTTGAACGGAAAGTATTAGAT
GCATTACGCCAACCCTTAGAAAGTGGTGAAATAGTTATCTCTCGTGCCACTGCTAAGATTCAATTCCCCGCTAAATTTCA
ATTAGTTGCTGCTATGAATCCAAGCCCAACAGGGCATTATCAAGGATCGCACAATCGCACATCACCACAACAAATTATCC
GTTATTTGAATCGGTTATCAGGACCTTTTTTAGATCGCTTTGATTTATCGATTGAAGTCCCCTTGTTACCGCAGGGTGCA
TTACAAAGCCAACAAGATCGGGGTGAAAGCAGCGAACAAGTGCGGTTAAAAATTGTTAAGGTACGCGAAAGACAATTCGC
TCGGCAGGGTAAAGTGAATGCTCATTTAACCAGCAAAGAAATTGAACGTTATTGCCCGTTATTAGAAAAAGATGCGATTT
TTTTGGAAAATGCGCTAACTAAACTCGGTTTATCGGTACGAGCTTATCATCGTATTCTCAAGGTTTCTCGTACTATTGCA
GATTTAGCAGAGTCGGAACAAATTACGCAAGCCCATTTAGCCGAAGCCTTGGGGTATCGTACTATGGATCGGTTATTATT
GAAGTTACATGAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1L0D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

79.175

99.609

0.789
  comM Glaesserella parasuis strain SC1401

76.125

100

0.761
  comM Vibrio cholerae strain A1552

65.815

99.609

0.656
  comM Vibrio campbellii strain DS40M4

63.992

100

0.64
  comM Legionella pneumophila str. Paris

51.491

98.434

0.507
  comM Legionella pneumophila strain ERS1305867

51.491

98.434

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.422

100

0.47

Multiple sequence alignment