Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | O1Q83_RS09790 | Genome accession | NZ_CP170642 |
| Coordinates | 1988747..1989265 (+) | Length | 172 a.a. |
| NCBI ID | WP_132302559.1 | Uniprot ID | A0A4R1KQ27 |
| Organism | Lonepinella koalarum strain ACM3666 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1983747..1994265
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1Q83_RS09780 (O1Q83_01922) | - | 1984383..1985504 (-) | 1122 | WP_132302561.1 | NapC/NirT family cytochrome c | - |
| O1Q83_RS09785 (O1Q83_01923) | uvrA | 1985766..1988597 (-) | 2832 | WP_132302560.1 | excinuclease ABC subunit UvrA | - |
| O1Q83_RS09790 (O1Q83_01924) | ssb | 1988747..1989265 (+) | 519 | WP_132302559.1 | single-stranded DNA-binding protein | Machinery gene |
| O1Q83_RS09795 (O1Q83_01925) | - | 1989336..1989881 (+) | 546 | WP_132302558.1 | Sua5/YciO/YrdC/YwlC family protein | - |
| O1Q83_RS09800 (O1Q83_01926) | aroE | 1989885..1990694 (+) | 810 | WP_132302557.1 | shikimate dehydrogenase | - |
| O1Q83_RS09805 (O1Q83_01927) | - | 1990694..1991416 (+) | 723 | WP_132302556.1 | MgtC/SapB family protein | - |
| O1Q83_RS09810 (O1Q83_01928) | dld | 1991447..1993129 (+) | 1683 | WP_132302555.1 | D-lactate dehydrogenase | - |
| O1Q83_RS09815 (O1Q83_01929) | - | 1993260..1993691 (-) | 432 | WP_391540681.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19285.11 Da Isoelectric Point: 5.3027
>NTDB_id=1058294 O1Q83_RS09790 WP_132302559.1 1988747..1989265(+) (ssb) [Lonepinella koalarum strain ACM3666]
MAGVNKVIIVGRLGNDPEIRTMPNGDAVANISVATSESWNDKNTGERREITEWHRIVFYRRQAEVVGEYLRKGSQVYVEG
RLRTRKWQDQSGQDRYTTEIQGDVMQMLDSRNTNQGGFNQDNGGFAGNGNFAGQQSGSYSRSTSAPRQPQQTQKVAPVNE
PPLDNFDDDIPF
MAGVNKVIIVGRLGNDPEIRTMPNGDAVANISVATSESWNDKNTGERREITEWHRIVFYRRQAEVVGEYLRKGSQVYVEG
RLRTRKWQDQSGQDRYTTEIQGDVMQMLDSRNTNQGGFNQDNGGFAGNGNFAGQQSGSYSRSTSAPRQPQQTQKVAPVNE
PPLDNFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=1058294 O1Q83_RS09790 WP_132302559.1 1988747..1989265(+) (ssb) [Lonepinella koalarum strain ACM3666]
ATGGCAGGAGTTAATAAAGTCATTATCGTTGGTCGCTTAGGTAACGACCCGGAAATTCGTACCATGCCAAACGGCGATGC
AGTCGCCAATATTAGTGTTGCGACGAGTGAAAGTTGGAATGATAAAAATACTGGTGAACGGCGTGAAATCACTGAATGGC
ATCGCATTGTGTTCTATCGTCGTCAAGCGGAAGTGGTGGGTGAATACTTACGCAAAGGTTCACAAGTTTATGTCGAAGGT
CGTTTACGTACCCGGAAATGGCAAGATCAGAGCGGACAAGATCGTTACACCACTGAAATTCAAGGCGATGTCATGCAAAT
GTTAGACAGTCGCAATACAAACCAAGGTGGATTTAACCAAGATAACGGTGGCTTTGCCGGCAACGGTAATTTTGCTGGGC
AACAATCTGGTAGTTATTCACGCTCAACATCTGCACCTCGTCAACCTCAGCAAACACAAAAAGTAGCGCCCGTAAATGAA
CCTCCTTTAGACAATTTTGATGATGATATCCCGTTTTAA
ATGGCAGGAGTTAATAAAGTCATTATCGTTGGTCGCTTAGGTAACGACCCGGAAATTCGTACCATGCCAAACGGCGATGC
AGTCGCCAATATTAGTGTTGCGACGAGTGAAAGTTGGAATGATAAAAATACTGGTGAACGGCGTGAAATCACTGAATGGC
ATCGCATTGTGTTCTATCGTCGTCAAGCGGAAGTGGTGGGTGAATACTTACGCAAAGGTTCACAAGTTTATGTCGAAGGT
CGTTTACGTACCCGGAAATGGCAAGATCAGAGCGGACAAGATCGTTACACCACTGAAATTCAAGGCGATGTCATGCAAAT
GTTAGACAGTCGCAATACAAACCAAGGTGGATTTAACCAAGATAACGGTGGCTTTGCCGGCAACGGTAATTTTGCTGGGC
AACAATCTGGTAGTTATTCACGCTCAACATCTGCACCTCGTCAACCTCAGCAAACACAAAAAGTAGCGCCCGTAAATGAA
CCTCCTTTAGACAATTTTGATGATGATATCCCGTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
64.767 |
100 |
0.727 |
| ssb | Vibrio cholerae strain A1552 |
56.354 |
100 |
0.593 |
| ssb | Neisseria gonorrhoeae MS11 |
48.864 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
48.295 |
100 |
0.494 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
33.88 |
100 |
0.36 |