Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O1Q83_RS01775 Genome accession   NZ_CP170642
Coordinates   364458..365678 (+) Length   406 a.a.
NCBI ID   WP_132301908.1    Uniprot ID   A0A4R1KW80
Organism   Lonepinella koalarum strain ACM3666     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359458..370678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q83_RS01745 (O1Q83_00348) yejK 359673..360692 (+) 1020 WP_132301920.1 nucleoid-associated protein YejK -
  O1Q83_RS01750 (O1Q83_00349) bamE 360755..361171 (+) 417 WP_132301918.1 outer membrane protein assembly factor BamE -
  O1Q83_RS01755 (O1Q83_00350) - 361250..361900 (-) 651 WP_132301916.1 HAD family phosphatase -
  O1Q83_RS01760 (O1Q83_00351) ampD 361904..362449 (-) 546 WP_132301914.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O1Q83_RS01765 (O1Q83_00352) pilA 362573..363046 (+) 474 WP_132301912.1 prepilin peptidase-dependent pilin Machinery gene
  O1Q83_RS01770 (O1Q83_00353) pilB 363049..364461 (+) 1413 WP_132301910.1 GspE/PulE family protein Machinery gene
  O1Q83_RS01775 (O1Q83_00354) pilC 364458..365678 (+) 1221 WP_132301908.1 type II secretion system F family protein Machinery gene
  O1Q83_RS01780 (O1Q83_00355) - 365675..366373 (+) 699 WP_132301906.1 A24 family peptidase -
  O1Q83_RS01785 (O1Q83_00356) coaE 366399..367028 (+) 630 WP_132301904.1 dephospho-CoA kinase -
  O1Q83_RS01790 (O1Q83_00357) yacG 367012..367212 (+) 201 WP_132301902.1 DNA gyrase inhibitor YacG -
  O1Q83_RS01795 (O1Q83_00358) - 367215..367481 (+) 267 WP_132301900.1 GNAT family N-acetyltransferase -
  O1Q83_RS01800 (O1Q83_00359) - 367889..369289 (+) 1401 WP_132301898.1 sodium:alanine symporter family protein -
  O1Q83_RS01805 (O1Q83_00360) - 369446..370441 (+) 996 WP_132301896.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 46172.91 Da        Isoelectric Point: 9.8033

>NTDB_id=1058279 O1Q83_RS01775 WP_132301908.1 364458..365678(+) (pilC) [Lonepinella koalarum strain ACM3666]
MKLKMYHWQGINRLNQKQKGVLIAESEQIARQQLLNRGLQQIKLQQNWQLSTKPNQAEICDTLLQLAILLKSSVPLKNSL
LILLQNCTNIQLNSWLHQLLNQIETGLSFSQALQNQGQFLTLQERQLIQVGEMTGKLATVCNQIAEHRQQSVALQRKLQK
ILLYPMMVLGISVILTALLLIFIVPQFADMYGDNQAQLPFFTQVLLFLSDLLQQYFWLIAVLIVGIIILIKRQLKSSIWL
NQLKIKLISNTPMLGNIVQLSRLVGFCRGLHLMLKSGVPLNQALQSFLPQKKTWQNKIELQGDLTLIQEIQSMLHWITHG
YAFSVAVGAELFPMQAQQMLQVGEQSGQLSQMLLHIAESYQQQLDHKIDLLSQMLEPLLMVVIGGLIGLIMLGMYLPIFN
MGSLIQ

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1058279 O1Q83_RS01775 WP_132301908.1 364458..365678(+) (pilC) [Lonepinella koalarum strain ACM3666]
ATGAAACTCAAAATGTACCACTGGCAAGGTATTAATCGGTTAAATCAAAAACAAAAAGGCGTTTTAATTGCGGAAAGTGA
ACAAATCGCACGTCAACAATTATTAAACCGAGGTTTACAGCAAATTAAATTACAGCAAAACTGGCAATTATCCACTAAAC
CGAATCAGGCAGAAATTTGTGATACCTTACTACAATTAGCCATTTTATTAAAATCTTCTGTTCCGTTAAAAAATAGCTTA
TTGATTTTATTGCAAAATTGTACCAATATTCAGTTAAATTCGTGGTTACATCAGCTATTAAATCAAATTGAAACAGGGTT
ATCTTTTTCTCAGGCATTACAGAATCAAGGGCAATTTTTAACCTTACAAGAACGCCAATTAATTCAAGTCGGTGAAATGA
CGGGTAAACTGGCAACGGTGTGTAATCAAATCGCCGAGCATCGTCAACAATCGGTGGCATTACAACGAAAATTGCAGAAA
ATCTTGTTGTATCCGATGATGGTACTCGGTATCTCTGTGATATTGACCGCACTTTTACTGATTTTTATTGTGCCACAATT
TGCCGATATGTATGGTGATAATCAAGCCCAACTACCGTTTTTTACTCAAGTATTGTTATTTTTATCGGATCTGTTACAGC
AGTATTTTTGGCTCATTGCTGTGTTGATTGTTGGCATTATTATTCTGATTAAACGTCAATTAAAATCATCGATCTGGCTG
AATCAACTCAAAATAAAATTAATCTCTAACACCCCCATGTTAGGCAATATTGTACAGCTTTCTAGGTTGGTAGGATTTTG
TCGAGGCTTGCACTTAATGCTGAAATCAGGTGTGCCATTAAATCAAGCATTGCAGTCATTTTTACCCCAAAAGAAAACTT
GGCAAAACAAGATCGAATTACAAGGGGATTTAACTTTAATTCAAGAAATTCAGTCTATGCTTCATTGGATTACACACGGC
TATGCTTTTTCAGTAGCAGTGGGAGCAGAATTATTTCCGATGCAAGCTCAACAAATGTTGCAGGTGGGCGAGCAATCGGG
ACAACTTTCGCAAATGTTACTGCATATTGCAGAGAGTTATCAGCAACAGCTCGATCATAAAATTGATCTGCTTTCACAAA
TGTTAGAGCCATTGTTAATGGTGGTGATTGGTGGACTGATTGGTTTGATTATGTTGGGAATGTATTTGCCGATCTTTAAT
ATGGGTTCGTTAATTCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R1KW80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

59.852

100

0.599
  pilC Haemophilus influenzae 86-028NP

59.606

100

0.596
  pilC Glaesserella parasuis strain SC1401

39.9

98.768

0.394

Multiple sequence alignment