Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFJIS_RS07790 Genome accession   NZ_CP170558
Coordinates   1663976..1665514 (+) Length   512 a.a.
NCBI ID   WP_390347348.1    Uniprot ID   -
Organism   Variovorax boronicumulans strain UC19_11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1658976..1670514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFJIS_RS07770 (ACFJIS_07770) - 1659884..1660813 (-) 930 WP_307589546.1 SMP-30/gluconolactonase/LRE family protein -
  ACFJIS_RS07775 (ACFJIS_07775) - 1661020..1662453 (-) 1434 WP_159273472.1 ammonium transporter -
  ACFJIS_RS07780 (ACFJIS_07780) glnK 1662483..1662821 (-) 339 WP_056583732.1 P-II family nitrogen regulator -
  ACFJIS_RS07785 (ACFJIS_07785) - 1662892..1663758 (-) 867 WP_062482029.1 TorF family putative porin -
  ACFJIS_RS07790 (ACFJIS_07790) comM 1663976..1665514 (+) 1539 WP_390347348.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFJIS_RS07795 (ACFJIS_07795) - 1665527..1667497 (-) 1971 WP_390347350.1 serine/threonine-protein kinase -
  ACFJIS_RS07800 (ACFJIS_07800) tagF 1667475..1668167 (-) 693 WP_390347352.1 type VI secretion system-associated protein TagF -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 53806.37 Da        Isoelectric Point: 8.8201

>NTDB_id=1058001 ACFJIS_RS07790 WP_390347348.1 1663976..1665514(+) (comM) [Variovorax boronicumulans strain UC19_11]
MSLSLVQSRALLGLEAAAVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPTNKKIVVNLAPADLPKDSG
RFDLPIALGILAASGQIENARLAGHEFAGELSLSGELRPVRGALAMAVATYTQGTAVRLVLPLDSAQEAALVPGAQVYGA
RHLLDVVRQFVASGGGPVDASDDGWTRVRAAPGDGAPRYADLADVKGHTGAKRALEIAAAGGHSLLMVGEPGSGKSMLAH
RFAGLLPPMNVDEALESAAIASLDGRLAPERWMSRPTATPHHTASAVALVGGGSPPRPGEISRAHHGVLFLDEFPEFTRA
ALEALREPLETGTITITRAARRAEFPARFQLVAAMNPCPCGYLGSTLKPCRCTPERVARYQGKLSGPLLDRIDLHIEVAA
VSAPQLLDAPAGESTDSIRARVVGARDRALQRQGHANQALQGRAIDTHAVLDNAARQLLQQAAARLGWSARSTHRALKVA
RTIADLAGQDAVQAAHVAEAVQYRRALRTGTP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=1058001 ACFJIS_RS07790 WP_390347348.1 1663976..1665514(+) (comM) [Variovorax boronicumulans strain UC19_11]
ATGAGTCTGTCTTTGGTGCAAAGCCGCGCCTTGCTCGGCCTGGAGGCCGCCGCCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCCTGCCGAGCTTCACGCTGGTCGGGCTGGCCGAGACCGAGGTCAAGGAGGCGCGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGGCTCGAATTTCCGACCAACAAGAAGATCGTCGTCAACCTCGCCCCGGCCGATCTGCCGAAGGACTCGGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTCGCGGCCAGCGGGCAGATCGAGAACGCCCGCCTCGCCGGCCACGAGTT
CGCGGGGGAGCTGTCGCTGTCGGGCGAACTGCGCCCCGTGCGCGGCGCGCTCGCGATGGCCGTGGCCACCTACACGCAAG
GCACGGCCGTGCGGCTGGTGCTGCCCCTGGACAGCGCCCAGGAGGCCGCGCTGGTGCCCGGCGCGCAGGTGTACGGCGCC
CGGCACCTGCTCGACGTGGTGCGCCAGTTCGTCGCCAGCGGCGGCGGGCCGGTCGATGCGAGCGACGACGGCTGGACCCG
CGTGCGCGCCGCGCCCGGCGACGGCGCCCCGCGCTATGCCGACCTGGCCGACGTCAAGGGCCACACCGGCGCCAAGCGCG
CCCTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGCTGATGGTGGGCGAGCCGGGCTCGGGCAAGTCGATGCTGGCGCAC
CGCTTCGCCGGCCTGCTGCCGCCGATGAACGTGGACGAGGCACTGGAAAGCGCGGCCATCGCCAGCCTCGACGGCCGGCT
GGCGCCCGAGCGCTGGATGAGCCGCCCGACGGCCACGCCGCATCACACGGCGAGCGCGGTGGCGCTGGTGGGTGGCGGCT
CGCCGCCCCGGCCGGGCGAGATCTCGCGCGCGCACCACGGCGTGCTGTTTTTGGATGAATTCCCCGAGTTCACGCGCGCC
GCGCTCGAAGCCCTGCGCGAGCCGCTGGAGACCGGCACCATCACGATCACCCGCGCCGCCCGTCGCGCGGAGTTCCCGGC
CCGCTTCCAGCTCGTCGCCGCGATGAACCCCTGCCCCTGCGGCTACCTCGGCTCCACGCTGAAGCCCTGCCGCTGCACGC
CCGAGCGCGTCGCGCGCTACCAGGGCAAGCTCAGCGGTCCGCTGCTGGACCGCATCGACCTGCACATCGAGGTGGCGGCC
GTGTCGGCGCCGCAGCTGCTCGATGCGCCGGCGGGCGAATCGACCGACAGCATCCGCGCGCGCGTGGTGGGCGCACGCGA
CCGCGCGCTGCAACGTCAGGGCCACGCGAACCAGGCGCTGCAGGGCCGTGCGATCGACACGCATGCCGTGCTCGACAACG
CCGCCCGCCAGCTGCTGCAGCAGGCGGCCGCGCGGCTGGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAGGTGGCG
CGCACCATCGCCGACCTCGCGGGGCAGGACGCGGTGCAGGCCGCGCATGTGGCGGAGGCGGTGCAGTACCGCCGCGCATT
GCGCACCGGCACGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.198

98.828

0.496
  comM Vibrio campbellii strain DS40M4

49.012

98.828

0.484
  comM Glaesserella parasuis strain SC1401

48.425

99.219

0.48
  comM Legionella pneumophila strain ERS1305867

47.75

99.805

0.477
  comM Legionella pneumophila str. Paris

47.75

99.805

0.477
  comM Haemophilus influenzae Rd KW20

47.647

99.609

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.47

100

0.436

Multiple sequence alignment