Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACFBML_RS14000 Genome accession   NZ_CP170491
Coordinates   3056089..3056628 (-) Length   179 a.a.
NCBI ID   WP_005444320.1    Uniprot ID   -
Organism   Vibrio harveyi strain LcV6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3051089..3061628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFBML_RS13980 (ACFBML_13980) - 3051399..3051728 (-) 330 WP_009698822.1 hypothetical protein -
  ACFBML_RS13985 (ACFBML_13985) gspM 3051721..3052371 (-) 651 WP_005444327.1 type II secretion system protein GspM -
  ACFBML_RS13990 (ACFBML_13990) - 3052368..3053816 (-) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  ACFBML_RS13995 (ACFBML_13995) csrD 3053828..3055837 (-) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  ACFBML_RS14000 (ACFBML_14000) ssb 3056089..3056628 (-) 540 WP_005444320.1 single-stranded DNA-binding protein Machinery gene
  ACFBML_RS14005 (ACFBML_14005) qstR 3056923..3057567 (+) 645 WP_050906941.1 LuxR C-terminal-related transcriptional regulator Regulator
  ACFBML_RS14010 (ACFBML_14010) galU 3057729..3058601 (+) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACFBML_RS14015 (ACFBML_14015) uvrA 3058739..3061561 (+) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19933.98 Da        Isoelectric Point: 4.9269

>NTDB_id=1057697 ACFBML_RS14000 WP_005444320.1 3056089..3056628(-) (ssb) [Vibrio harveyi strain LcV6]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQ
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1057697 ACFBML_RS14000 WP_005444320.1 3056089..3056628(-) (ssb) [Vibrio harveyi strain LcV6]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTAGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAG
CAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.827
  ssb Glaesserella parasuis strain SC1401

56.452

100

0.587
  ssb Neisseria meningitidis MC58

46.629

99.441

0.464
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464

Multiple sequence alignment