Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O1Q79_RS10390 Genome accession   NZ_CP170386
Coordinates   2151180..2151698 (+) Length   172 a.a.
NCBI ID   WP_386692301.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2146180..2156698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS10375 - 2147589..2147756 (-) 168 WP_386692297.1 substrate-binding domain-containing protein -
  O1Q79_RS10380 (O1Q79_02076) - 2147778..2148128 (+) 351 Protein_1997 transketolase C-terminal domain-containing protein -
  O1Q79_RS10385 (O1Q79_02077) uvrA 2148202..2151030 (-) 2829 WP_386692299.1 excinuclease ABC subunit UvrA -
  O1Q79_RS10390 (O1Q79_02078) ssb 2151180..2151698 (+) 519 WP_386692301.1 single-stranded DNA-binding protein Machinery gene
  O1Q79_RS10395 (O1Q79_02079) - 2151773..2152318 (+) 546 WP_386692303.1 Sua5/YciO/YrdC/YwlC family protein -
  O1Q79_RS10400 (O1Q79_02080) aroE 2152322..2153131 (+) 810 WP_386692305.1 shikimate dehydrogenase -
  O1Q79_RS10405 (O1Q79_02081) - 2153131..2153853 (+) 723 WP_386692307.1 MgtC/SapB family protein -
  O1Q79_RS10410 (O1Q79_02082) dld 2153884..2155569 (+) 1686 WP_386692309.1 D-lactate dehydrogenase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19200.00 Da        Isoelectric Point: 5.3111

>NTDB_id=1056533 O1Q79_RS10390 WP_386692301.1 2151180..2151698(+) (ssb) [Lonepinella sp. MS14434]
MAGVNKVIIVGRLGNDPEIRTMPNGEAVANISVATSESWNDKNTGERREVTEWHRIVFYRRQAEVVGEYLRKGSQVYVEG
RLRTRKWQDQSGQDRYTTEIQGDVMQMLDSRNANQGGFNQDNGGFASNGNFAGQQSGGYSRSTSAPRQPQQTQKAAPVSE
PPLDNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1056533 O1Q79_RS10390 WP_386692301.1 2151180..2151698(+) (ssb) [Lonepinella sp. MS14434]
ATGGCAGGAGTTAATAAAGTCATTATCGTTGGTCGCTTAGGTAACGATCCGGAAATTCGTACCATGCCAAACGGCGAAGC
GGTCGCCAATATTAGTGTTGCGACGAGTGAAAGTTGGAATGATAAAAATACCGGTGAACGGCGTGAAGTCACTGAATGGC
ATCGCATTGTGTTCTATCGTCGTCAAGCTGAAGTGGTGGGTGAATACTTACGCAAAGGTTCACAGGTTTATGTTGAAGGT
CGTTTACGTACTCGGAAATGGCAAGATCAGAGTGGACAAGATCGTTACACCACTGAAATTCAAGGCGATGTCATGCAAAT
GTTGGACAGTCGCAATGCAAACCAAGGTGGATTTAACCAAGATAACGGTGGCTTTGCCAGCAATGGTAATTTTGCGGGGC
AACAATCTGGTGGTTATTCACGCTCAACATCTGCACCTCGTCAGCCCCAGCAAACACAAAAAGCAGCACCAGTAAGTGAA
CCACCTTTGGATAATTTTGATGATGATATTCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.767

100

0.727
  ssb Vibrio cholerae strain A1552

55.801

100

0.587
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.506
  ssb Neisseria meningitidis MC58

47.701

100

0.483
  ssb Latilactobacillus sakei subsp. sakei 23K

34.637

100

0.36

Multiple sequence alignment