Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   O1Q79_RS10260 Genome accession   NZ_CP170386
Coordinates   2124668..2126203 (-) Length   511 a.a.
NCBI ID   WP_386693394.1    Uniprot ID   -
Organism   Lonepinella sp. MS14434     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2119668..2131203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q79_RS10240 (O1Q79_02049) - 2121183..2121899 (-) 717 WP_386692252.1 hypothetical protein -
  O1Q79_RS10245 (O1Q79_02050) carA 2121892..2123034 (-) 1143 WP_386692254.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  O1Q79_RS10250 (O1Q79_02051) - 2123301..2124050 (+) 750 WP_386692256.1 VacJ family lipoprotein -
  O1Q79_RS10255 (O1Q79_02052) - 2124076..2124570 (+) 495 WP_132300022.1 YfbU family protein -
  O1Q79_RS10260 (O1Q79_02053) comM 2124668..2126203 (-) 1536 WP_386693394.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  O1Q79_RS10265 (O1Q79_02054) yihA 2126300..2126926 (-) 627 WP_386692260.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  O1Q79_RS10270 (O1Q79_02055) - 2127250..2128239 (+) 990 WP_386692262.1 arabinose ABC transporter substrate-binding protein -
  O1Q79_RS10275 (O1Q79_02056) araG 2128332..2129819 (+) 1488 WP_386692264.1 L-arabinose ABC transporter ATP-binding protein AraG -
  O1Q79_RS10280 (O1Q79_02057) araH 2129838..2130806 (+) 969 WP_386692266.1 L-arabinose ABC transporter permease AraH -

Sequence

Protein


Download         Length: 511 a.a.        Molecular weight: 56217.74 Da        Isoelectric Point: 9.8559

>NTDB_id=1056532 O1Q79_RS10260 WP_386693394.1 2124668..2126203(-) (comM) [Lonepinella sp. MS14434]
MSLAIVYSRASIGVQAPLVTIEVHISNGKPNFVLVGLPEKTVKEAQDRVRSALINAQFKYPPKRITVNLAPADLPKEGGR
FDLPIALGILAASGQINAEQLRQFEFLGELALTGNLRGVQGVIPAILAAQKAKRTMIIAPQNANEASLISEHDSYYANSL
LEVVQFLDKQLNLPTASQMADQIRSNAKQSAVQNSKDLTDIIGQHHAKRALTIAAAGQHNLLLLGPPGTGKTMLASRLTD
LLPEMSDQEAIETASVTSLIQNELNFANWKKRPFRCPHHSASLPALVGGGSIPKPGEISLAHNGILFLDELPEFERKVLD
ALRQPLESGEIVISRATAKIQFPAKFQLVAAMNPSPTGHYQGSHNRTSPQQIIRYLNRLSGPFLDRFDLSIEVPLLPQGA
LQSQQDRGESSEQVRLKIVKVRERQFARQGKVNAHLTSKEIERYCPLLQKDAIFLENALTKLGLSVRAYHRILKVSRTIA
DLAESEQITQTHLAEALGYRTMDRLLLKLHE

Nucleotide


Download         Length: 1536 bp        

>NTDB_id=1056532 O1Q79_RS10260 WP_386693394.1 2124668..2126203(-) (comM) [Lonepinella sp. MS14434]
ATGTCGTTAGCCATTGTTTATAGCCGTGCCTCTATCGGGGTACAAGCCCCCCTTGTGACCATCGAAGTCCATATTAGCAA
TGGTAAACCAAATTTTGTGCTAGTGGGATTACCAGAAAAAACCGTGAAAGAAGCACAGGATCGCGTGAGAAGTGCCTTGA
TTAATGCACAATTTAAATATCCACCAAAACGCATTACCGTTAATCTTGCCCCAGCAGATTTACCTAAAGAGGGGGGACGT
TTTGATTTGCCGATAGCGTTGGGGATTTTGGCAGCATCAGGGCAAATTAATGCGGAACAATTACGTCAATTTGAATTTCT
TGGGGAACTGGCATTAACGGGGAATTTACGTGGTGTGCAAGGGGTTATTCCTGCTATTTTAGCGGCTCAGAAAGCGAAAA
GAACCATGATTATTGCCCCGCAAAATGCCAATGAAGCATCTCTCATCTCAGAACACGACAGTTATTACGCAAATTCACTG
TTAGAAGTGGTGCAGTTTCTCGACAAGCAATTAAATTTGCCAACGGCTAGTCAAATGGCAGACCAAATTAGGTCAAATGC
CAAGCAAAGTGCGGTGCAAAATAGCAAAGATTTAACCGATATTATCGGGCAACATCATGCCAAACGAGCCTTAACCATTG
CCGCTGCTGGGCAACATAACTTACTTTTATTAGGTCCCCCAGGGACTGGCAAAACCATGCTTGCCAGTCGATTAACCGAT
CTCTTGCCCGAAATGAGTGATCAAGAAGCCATAGAAACCGCCTCTGTGACTAGCCTGATTCAAAATGAACTGAATTTTGC
CAATTGGAAGAAACGCCCATTCCGTTGCCCACATCATAGTGCATCTTTGCCTGCGTTAGTGGGTGGCGGATCGATCCCAA
AACCTGGCGAAATTTCATTAGCTCACAATGGCATTCTGTTCTTAGATGAATTGCCAGAATTTGAACGTAAAGTATTAGAT
GCGTTACGCCAACCCTTAGAAAGTGGTGAAATAGTTATCTCTCGTGCCACCGCTAAGATTCAATTCCCCGCTAAATTTCA
ATTAGTTGCCGCCATGAATCCAAGCCCAACAGGGCATTATCAAGGATCGCACAATCGCACATCACCACAACAAATTATCC
GTTATTTGAATCGGTTATCAGGACCTTTTTTAGATCGTTTTGATTTATCTATTGAAGTCCCCTTGTTACCACAGGGTGCG
TTACAAAGCCAACAAGATCGGGGTGAAAGCAGCGAACAAGTGCGGTTAAAAATTGTTAAGGTACGCGAAAGACAATTCGC
TCGGCAGGGTAAAGTGAATGCTCATTTAACCAGCAAAGAAATTGAACGTTATTGCCCGTTATTACAAAAAGATGCGATTT
TTTTGGAAAATGCGCTAACTAAACTCGGTTTATCGGTACGAGCTTATCATCGTATTCTCAAGGTTTCTCGTACTATTGCA
GATTTAGCAGAGTCGGAACAAATTACGCAAACCCATTTAGCGGAAGCATTGGGGTATCGTACTATGGATCGGTTATTATT
GAAGTTACATGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(197-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

79.568

99.609

0.793
  comM Glaesserella parasuis strain SC1401

75.734

100

0.757
  comM Vibrio cholerae strain A1552

66.012

99.609

0.658
  comM Vibrio campbellii strain DS40M4

64.384

100

0.644
  comM Legionella pneumophila str. Paris

51.491

98.434

0.507
  comM Legionella pneumophila strain ERS1305867

51.491

98.434

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.035

100

0.466

Multiple sequence alignment