Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   O1Q81_RS09665 Genome accession   NZ_CP170385
Coordinates   2004211..2005611 (+) Length   466 a.a.
NCBI ID   WP_386697371.1    Uniprot ID   -
Organism   Lonepinella sp. MS14436     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1999211..2010611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q81_RS09640 (O1Q81_01920) - 1999225..2001822 (-) 2598 WP_386697363.1 penicillin-binding protein 1A -
  O1Q81_RS09645 (O1Q81_01921) - 2001940..2002755 (+) 816 WP_386697366.1 hypothetical protein -
  O1Q81_RS09650 (O1Q81_01922) - 2002745..2003293 (+) 549 WP_386687358.1 hypothetical protein -
  O1Q81_RS09655 (O1Q81_01923) - 2003271..2003810 (+) 540 WP_386694753.1 competence protein -
  O1Q81_RS09660 (O1Q81_01924) - 2003812..2004201 (+) 390 WP_386697368.1 hypothetical protein -
  O1Q81_RS09665 (O1Q81_01925) comE 2004211..2005611 (+) 1401 WP_386697371.1 type IV pilus secretin PilQ Machinery gene
  O1Q81_RS09670 (O1Q81_01926) acpP 2005650..2005880 (-) 231 WP_115637124.1 acyl carrier protein -
  O1Q81_RS09675 (O1Q81_01927) fabG 2006119..2006847 (-) 729 WP_386687367.1 3-oxoacyl-ACP reductase FabG -
  O1Q81_RS09680 (O1Q81_01928) fabD 2006868..2007809 (-) 942 WP_386697374.1 ACP S-malonyltransferase -
  O1Q81_RS09685 (O1Q81_01929) - 2007860..2008810 (-) 951 WP_386694760.1 beta-ketoacyl-ACP synthase III -
  O1Q81_RS09690 (O1Q81_01930) plsX 2008852..2009871 (-) 1020 WP_386687373.1 phosphate acyltransferase PlsX -
  O1Q81_RS09695 (O1Q81_01931) rpmF 2009893..2010063 (-) 171 WP_132302023.1 50S ribosomal protein L32 -
  O1Q81_RS09700 (O1Q81_01932) yceD 2010081..2010605 (-) 525 WP_386687375.1 23S rRNA accumulation protein YceD -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 50870.16 Da        Isoelectric Point: 6.1263

>NTDB_id=1056504 O1Q81_RS09665 WP_386697371.1 2004211..2005611(+) (comE) [Lonepinella sp. MS14436]
MNTLIYLLKFSLKCGLVWAIFFTSSYAEQPSDLTFSIRLKQAPLVATLQQLALEQNANLIINDELTGTLSLQLENTTLDQ
LFHSVAKIKNLSLIKEKGIYYLNQENIAANDGAGDFPAMSDISAPVIEPLHTATLKLHFAKASEVMKSLTTGNGSLLSGE
GSISFDDRSNLLIVKDNAQSIKNIRKLVKELDKPIEQIAIEARIVTITDESLQELGVRWGLFDPTSSSHKVAGSLAANGF
SNIADNLNVNFGAVNTPAGSLALQVAKINGRLLDLELTALERENNVKIIASPKLLTTNKKSASIKQGTEIPYVSTNEKSG
SQNVEFREAVLGLEVTPHISQDNAILLDLIVSQNSPGAAVQSGEGEVITIDKQEINTQVFAKDGETIVLGGVFQDTLSKG
VDKVPVLGDIPVVKHLFRKQNDKHQKRELVIFVTPHILKQGQSIQDFEKSRQKDNKIVESRGKLIE

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1056504 O1Q81_RS09665 WP_386697371.1 2004211..2005611(+) (comE) [Lonepinella sp. MS14436]
ATGAACACCTTGATTTATCTATTAAAGTTTAGCCTAAAGTGCGGTTTAGTTTGGGCTATTTTTTTCACCAGCAGTTATGC
TGAACAACCCTCCGATCTCACTTTTTCAATTCGATTAAAACAAGCACCATTGGTAGCCACCTTGCAACAGCTCGCATTAG
AACAAAATGCGAATTTAATTATCAATGATGAACTCACAGGAACCTTATCCTTACAATTAGAAAATACCACGCTCGATCAA
TTATTTCACTCGGTGGCAAAAATTAAAAATCTCTCCCTGATTAAAGAAAAAGGAATTTATTATCTGAATCAAGAAAATAT
TGCAGCAAACGATGGGGCAGGTGATTTTCCTGCAATGTCTGATATATCTGCCCCAGTCATAGAACCACTACATACTGCAA
CCCTTAAATTGCATTTTGCTAAAGCCTCAGAAGTGATGAAATCTTTAACTACGGGGAATGGATCTTTATTGTCTGGGGAA
GGTAGCATTAGCTTTGATGATCGCAGTAATTTATTAATTGTGAAAGACAATGCTCAGTCCATTAAAAATATTCGCAAGTT
AGTCAAAGAGTTAGATAAACCGATAGAACAAATTGCGATTGAAGCTCGCATTGTTACCATTACAGATGAAAGTTTACAAG
AATTAGGGGTTCGTTGGGGATTATTCGATCCAACTAGCAGTTCACACAAAGTGGCAGGAAGCCTTGCTGCCAATGGTTTT
AGCAATATTGCAGATAATTTAAATGTGAATTTCGGAGCAGTCAATACCCCTGCTGGTTCGTTGGCATTACAAGTGGCAAA
AATTAATGGGCGTTTATTAGATTTAGAATTAACCGCACTTGAGCGAGAAAATAACGTCAAAATTATTGCCAGCCCCAAAT
TACTTACCACTAACAAAAAATCAGCGAGCATTAAACAAGGTACTGAAATCCCTTATGTATCGACCAACGAAAAAAGCGGT
TCGCAAAATGTAGAATTTCGTGAAGCCGTATTAGGCTTAGAAGTAACTCCCCATATTTCACAAGATAATGCCATTTTGTT
GGATCTTATCGTCAGCCAAAATTCGCCTGGAGCAGCAGTACAATCTGGTGAGGGAGAGGTGATCACCATTGATAAACAAG
AAATTAACACGCAAGTATTTGCCAAAGATGGCGAAACCATTGTATTAGGTGGTGTATTTCAAGATACATTAAGTAAAGGT
GTCGATAAAGTCCCTGTATTAGGTGATATTCCTGTGGTAAAACATCTATTCCGTAAACAAAATGATAAACACCAGAAACG
AGAATTAGTCATTTTTGTTACCCCACATATTTTAAAACAAGGACAATCTATTCAAGATTTTGAGAAGAGTCGCCAGAAAG
ACAACAAAATTGTCGAAAGCAGAGGGAAGTTAATTGAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(133-197)

Bacterial type II and III secretion system protein (Secretin)

(279-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

64.626

94.635

0.612
  comE Haemophilus influenzae 86-028NP

63.946

94.635

0.605
  comE Glaesserella parasuis strain SC1401

54.137

90.773

0.491
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.941

91.202

0.373
  pilQ Vibrio cholerae strain A1552

40.941

91.202

0.373
  pilQ Vibrio campbellii strain DS40M4

40.326

92.06

0.371

Multiple sequence alignment