Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DYB47_RS05010 Genome accession   NZ_UHFV01000002
Coordinates   961889..962569 (-) Length   226 a.a.
NCBI ID   WP_003082114.1    Uniprot ID   G5JUB0
Organism   Streptococcus macacae NCTC 11558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956889..967569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS04980 (NCTC11558_01006) - 957141..957728 (+) 588 WP_040841484.1 CYTH domain-containing protein -
  DYB47_RS04985 (NCTC11558_01007) - 957915..958895 (+) 981 WP_003078873.1 ribose-phosphate diphosphokinase -
  DYB47_RS04990 (NCTC11558_01008) - 958898..960013 (+) 1116 WP_003081125.1 cysteine desulfurase family protein -
  DYB47_RS04995 (NCTC11558_01009) - 960016..960369 (+) 354 WP_003079108.1 DUF1831 domain-containing protein -
  DYB47_RS05000 (NCTC11558_01010) - 960527..961177 (+) 651 WP_003081925.1 redox-sensing transcriptional repressor Rex -
  DYB47_RS05005 (NCTC11558_01011) - 961187..961882 (+) 696 WP_003080173.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  DYB47_RS05010 (NCTC11558_01012) radC 961889..962569 (-) 681 WP_003082114.1 RadC family protein Machinery gene
  DYB47_RS05015 (NCTC11558_01013) - 962705..963436 (-) 732 WP_003080122.1 DUF3307 domain-containing protein -
  DYB47_RS05020 (NCTC11558_01014) - 963423..964112 (-) 690 WP_003081618.1 SatD family protein -
  DYB47_RS05025 (NCTC11558_01015) ffh 964311..965864 (-) 1554 WP_003080618.1 signal recognition particle protein -
  DYB47_RS05030 (NCTC11558_01016) - 965899..966231 (-) 333 WP_003079156.1 putative DNA-binding protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26003.95 Da        Isoelectric Point: 6.7588

>NTDB_id=1056458 DYB47_RS05010 WP_003082114.1 961889..962569(-) (radC) [Streptococcus macacae NCTC 11558]
MYTIQFQKEALLPRERLETYGAENLSNQELLAIFLRTGTKKEHVLSLSNTILSNLESLADLQSYSLEELQSIDGIGKIRS
IEIKAMLELSKRIFSSEYNKKERILSSERLAKLMIAELGEKKQEHLVALYLDTQNYIIKKQTIFIGSVRRSIAEPREILH
YACKTMATSLIIVHNHPSGETYPSENDLYFTEKIKRSCDDIGVVLLDHIIVGRKGYYSFREETDII

Nucleotide


Download         Length: 681 bp        

>NTDB_id=1056458 DYB47_RS05010 WP_003082114.1 961889..962569(-) (radC) [Streptococcus macacae NCTC 11558]
ATGTATACAATTCAATTTCAAAAAGAAGCACTTTTGCCAAGAGAACGTTTAGAGACTTACGGTGCTGAAAATTTAAGCAA
TCAAGAATTATTAGCCATTTTTCTTCGAACAGGCACTAAGAAAGAACATGTTCTTAGTCTTTCAAATACGATTTTAAGTA
ATTTGGAAAGTCTGGCAGATCTTCAAAGCTATTCTCTAGAAGAATTGCAGTCAATTGATGGTATTGGAAAGATTAGATCT
ATTGAGATAAAAGCCATGCTTGAATTATCTAAACGGATTTTTTCATCTGAATATAACAAAAAAGAACGTATCTTAAGCAG
TGAACGCTTGGCAAAACTGATGATTGCTGAGTTGGGCGAAAAAAAGCAAGAGCATCTTGTTGCTCTATACCTTGATACAC
AAAACTATATTATTAAAAAGCAAACTATCTTTATTGGCAGTGTTAGAAGATCTATAGCCGAGCCTCGCGAAATTCTTCAC
TATGCTTGTAAAACAATGGCAACTTCTCTAATAATTGTTCATAATCATCCATCAGGTGAAACTTATCCTAGTGAGAATGA
CTTATATTTTACAGAAAAAATAAAACGATCATGTGATGATATAGGAGTTGTCCTCTTAGATCACATAATCGTTGGTAGAA
AAGGATACTATAGTTTTCGTGAAGAGACGGATATTATTTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(106-222)

UPF0758 N-terminal (UPF0758_N)

(12-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JUB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

62.389

100

0.624
  radC Streptococcus pneumoniae TIGR4

61.062

100

0.611
  radC Streptococcus pneumoniae R6

60.619

100

0.606
  radC Streptococcus pneumoniae D39

60.619

100

0.606
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.143

92.92

0.438
  radC Haemophilus influenzae Rd KW20

38.14

95.133

0.363