Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AB5G97_RS21065 Genome accession   NZ_CP170371
Coordinates   4472729..4474243 (+) Length   504 a.a.
NCBI ID   WP_201947299.1    Uniprot ID   -
Organism   Aeromonas veronii strain Aer12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4467729..4479243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5G97_RS21050 (AB5G97_21050) - 4469454..4470398 (-) 945 WP_376868955.1 branched-chain amino acid transaminase -
  AB5G97_RS21055 (AB5G97_21055) ilvM 4470411..4470701 (-) 291 WP_042079763.1 acetolactate synthase 2 small subunit -
  AB5G97_RS21060 (AB5G97_21060) ilvG 4470698..4472344 (-) 1647 WP_376868957.1 acetolactate synthase 2 catalytic subunit -
  AB5G97_RS21065 (AB5G97_21065) comM 4472729..4474243 (+) 1515 WP_201947299.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AB5G97_RS21070 (AB5G97_21070) - 4474372..4475271 (+) 900 WP_043823224.1 acyltransferase -
  AB5G97_RS21075 (AB5G97_21075) - 4475278..4476243 (+) 966 WP_376868959.1 acyltransferase -
  AB5G97_RS21080 (AB5G97_21080) - 4476168..4476674 (-) 507 WP_201947295.1 DUF523 domain-containing protein -
  AB5G97_RS21085 (AB5G97_21085) - 4476671..4477321 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  AB5G97_RS21090 (AB5G97_21090) - 4477396..4478031 (+) 636 WP_005357452.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54536.45 Da        Isoelectric Point: 7.6884

>NTDB_id=1056377 AB5G97_RS21065 WP_201947299.1 4472729..4474243(+) (comM) [Aeromonas veronii strain Aer12]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPAPQSAENLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=1056377 AB5G97_RS21065 WP_201947299.1 4472729..4474243(+) (comM) [Aeromonas veronii strain Aer12]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTCCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGAGGCCGT
TTTGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCATGAATTTTT
GGGGGAGTTGGCCCTGACCGGAGAAATTCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GCACTCTGCTGGTACCGCGGGAGAACGGCCCCGAAGCGTCCCTCATTCAGGATGCCGAAGTGCGCACCGCCCACCAGTTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCCCTGCCGGCCCCCCAAAGCGCGGAGAACCTGCCCGATGT
GCCGGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGTCACAACCTGC
TGTTCATCGGCCCGCCAGGCACCGGCAAGAGCATGCTGGCGAGCCGTCTGCCCGGCATTCTGCCGCCGCTCAGCGAGCAG
GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACACCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCCGGCC
CCTTTCTCGATCGCTTCGACCTGACGGTGGAGGTGCCACTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCAGAGCGGGGG
GAGTCTAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGTGAGCGCATGCTAAGCCGCAATGGCAAACTCAACAATCT
ACTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCAGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

61.144

100

0.615
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment