Detailed information
Bioinformatically predicted
Overview
| Name | ctsF | Type | Machinery gene |
| Locus tag | R8953_RS01585 | Genome accession | NZ_AP028409 |
| Coordinates | 313838..315016 (+) | Length | 392 a.a. |
| NCBI ID | WP_317727612.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain IDH-11999 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 308838..320016
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8953_RS01560 (I11999_03030) | ctsR | 309407..309718 (+) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
| R8953_RS01565 (I11999_03040) | ctsD | 309696..311114 (+) | 1419 | WP_317727609.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| R8953_RS01570 (I11999_03050) | ctsP | 311107..311703 (+) | 597 | WP_075489172.1 | ATP-binding protein | Machinery gene |
| R8953_RS01575 (I11999_03060) | ctsX | 311700..312296 (+) | 597 | WP_317727610.1 | transformation system protein | Machinery gene |
| R8953_RS01580 (I11999_03070) | ctsE | 312289..313851 (+) | 1563 | WP_317727611.1 | GspE/PulE family protein | Machinery gene |
| R8953_RS01585 (I11999_03080) | ctsF | 313838..315016 (+) | 1179 | WP_317727612.1 | type II secretion system F family protein | Machinery gene |
| R8953_RS01590 (I11999_03090) | - | 315013..315777 (-) | 765 | WP_317727613.1 | TSUP family transporter | - |
| R8953_RS01595 (I11999_03100) | - | 315780..316544 (-) | 765 | WP_002781156.1 | TIGR02757 family protein | - |
| R8953_RS01600 (I11999_03110) | flgK | 316561..318387 (-) | 1827 | WP_002779264.1 | flagellar hook-associated protein FlgK | - |
| R8953_RS01605 (I11999_03120) | - | 318397..318831 (-) | 435 | WP_002779263.1 | flagellar protein FlgN | - |
| R8953_RS01610 (I11999_03130) | flgM | 318873..319070 (-) | 198 | WP_002779262.1 | flagellar biosynthesis anti-sigma factor FlgM | - |
| R8953_RS01615 (I11999_03140) | - | 319133..319474 (-) | 342 | WP_002784057.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 392 a.a. Molecular weight: 45720.45 Da Isoelectric Point: 9.2060
>NTDB_id=105592 R8953_RS01585 WP_317727612.1 313838..315016(+) (ctsF) [Campylobacter coli strain IDH-11999]
MKLYELEILKDKTKQKKHLRARNLNEAQAKAIAKKWEILNIKEMQKAGFKRLDNEKFILFFQELSLLCEVGISIKDALNE
LNKIYSHKMITKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPL
IVFLSVCAAFVLLMLFVVPNFKDLFEDLNLTLPFITELIIYIYNFLDNYILLVFCLTALILFLALFLYRKYYFFSYFCDS
LLLKIPLLSKFIIYQQNYSFFMIFSLLLKSGISLLDAFNLATLALNNKKILLYYQEIKTFMDSGLEISYAFKKVDLFDPL
VFSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPVMTLWVAILVLFLALGIFLPIWELSSGVNF
MKLYELEILKDKTKQKKHLRARNLNEAQAKAIAKKWEILNIKEMQKAGFKRLDNEKFILFFQELSLLCEVGISIKDALNE
LNKIYSHKMITKLCDNLNLGQNLSLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPL
IVFLSVCAAFVLLMLFVVPNFKDLFEDLNLTLPFITELIIYIYNFLDNYILLVFCLTALILFLALFLYRKYYFFSYFCDS
LLLKIPLLSKFIIYQQNYSFFMIFSLLLKSGISLLDAFNLATLALNNKKILLYYQEIKTFMDSGLEISYAFKKVDLFDPL
VFSMLSIAMKSSKLEFLSEEIAKYYKNKSENLMDKFLSFLEPVMTLWVAILVLFLALGIFLPIWELSSGVNF
Nucleotide
Download Length: 1179 bp
>NTDB_id=105592 R8953_RS01585 WP_317727612.1 313838..315016(+) (ctsF) [Campylobacter coli strain IDH-11999]
ATGAAGCTTTATGAGCTTGAAATTCTTAAAGACAAAACAAAACAGAAAAAGCATTTAAGAGCTAGAAATTTAAATGAAGC
TCAAGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATGCAAAAAGCGGGTTTTAAGAGATTGGATA
ATGAGAAATTTATCCTTTTCTTTCAAGAATTATCCCTGCTTTGTGAAGTAGGAATCAGCATAAAAGATGCTTTAAATGAG
CTTAATAAAATATATTCTCACAAAATGATTACTAAGCTTTGTGATAATTTAAATTTGGGACAAAATCTAAGCCTTGCTTT
TGAAAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCTCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAA
TTTTTATGCAAATTTCAAGATTAAGGCAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTG
ATTGTTTTTTTAAGTGTGTGCGCAGCTTTTGTTTTGTTAATGCTTTTTGTTGTGCCTAATTTTAAAGATTTGTTTGAGGA
TTTAAATTTAACCCTACCTTTTATAACTGAGCTTATAATTTATATTTATAATTTTTTAGATAATTATATTTTGCTTGTGT
TTTGTTTAACCGCACTTATTTTATTTCTTGCTTTATTTTTATATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGT
TTGCTTTTAAAAATTCCTTTATTGTCTAAATTTATCATTTATCAGCAAAATTATTCTTTTTTTATGATTTTTTCCTTACT
TTTAAAAAGCGGAATTTCTCTTTTAGATGCTTTTAACTTAGCCACCTTGGCTTTAAATAATAAAAAGATATTGTTATATT
ATCAAGAAATTAAAACATTTATGGATTCTGGCCTTGAAATAAGTTATGCTTTTAAAAAAGTAGATCTTTTTGATCCTTTA
GTTTTTTCTATGTTGAGTATAGCTATGAAGAGTTCTAAGCTTGAGTTTTTAAGTGAGGAGATTGCAAAGTATTATAAAAA
CAAAAGTGAAAATTTAATGGATAAGTTTTTAAGCTTTTTAGAGCCTGTAATGACCTTGTGGGTCGCGATTTTAGTATTGT
TTTTAGCGCTTGGAATTTTTTTGCCGATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
ATGAAGCTTTATGAGCTTGAAATTCTTAAAGACAAAACAAAACAGAAAAAGCATTTAAGAGCTAGAAATTTAAATGAAGC
TCAAGCAAAAGCTATCGCTAAAAAATGGGAAATTTTAAATATCAAAGAGATGCAAAAAGCGGGTTTTAAGAGATTGGATA
ATGAGAAATTTATCCTTTTCTTTCAAGAATTATCCCTGCTTTGTGAAGTAGGAATCAGCATAAAAGATGCTTTAAATGAG
CTTAATAAAATATATTCTCACAAAATGATTACTAAGCTTTGTGATAATTTAAATTTGGGACAAAATCTAAGCCTTGCTTT
TGAAAATGCAAATTTTGGGCTTACTCATGCGGAATTAGCTCTTATTAAAACTTCCCAAAACACAGGAAAATTAAGTGAAA
TTTTTATGCAAATTTCAAGATTAAGGCAAAATAATGTAGAAAATGAACAAAGAGTCAAAAAAGCTTTAAGATATCCTTTG
ATTGTTTTTTTAAGTGTGTGCGCAGCTTTTGTTTTGTTAATGCTTTTTGTTGTGCCTAATTTTAAAGATTTGTTTGAGGA
TTTAAATTTAACCCTACCTTTTATAACTGAGCTTATAATTTATATTTATAATTTTTTAGATAATTATATTTTGCTTGTGT
TTTGTTTAACCGCACTTATTTTATTTCTTGCTTTATTTTTATATAGAAAATATTATTTCTTTTCATATTTTTGCGATAGT
TTGCTTTTAAAAATTCCTTTATTGTCTAAATTTATCATTTATCAGCAAAATTATTCTTTTTTTATGATTTTTTCCTTACT
TTTAAAAAGCGGAATTTCTCTTTTAGATGCTTTTAACTTAGCCACCTTGGCTTTAAATAATAAAAAGATATTGTTATATT
ATCAAGAAATTAAAACATTTATGGATTCTGGCCTTGAAATAAGTTATGCTTTTAAAAAAGTAGATCTTTTTGATCCTTTA
GTTTTTTCTATGTTGAGTATAGCTATGAAGAGTTCTAAGCTTGAGTTTTTAAGTGAGGAGATTGCAAAGTATTATAAAAA
CAAAAGTGAAAATTTAATGGATAAGTTTTTAAGCTTTTTAGAGCCTGTAATGACCTTGTGGGTCGCGATTTTAGTATTGT
TTTTAGCGCTTGGAATTTTTTTGCCGATATGGGAACTTAGCTCAGGAGTAAATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsF | Campylobacter jejuni subsp. jejuni 81-176 |
60.406 |
100 |
0.607 |