Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   R8953_RS01565 Genome accession   NZ_AP028409
Coordinates   309696..311114 (+) Length   472 a.a.
NCBI ID   WP_317727609.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11999     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 304696..316114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS01550 (I11999_03010) - 305081..305719 (+) 639 WP_002784063.1 HAD family hydrolase -
  R8953_RS01555 (I11999_03020) nifJ 305823..309383 (+) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8953_RS01560 (I11999_03030) ctsR 309407..309718 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8953_RS01565 (I11999_03040) ctsD 309696..311114 (+) 1419 WP_317727609.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8953_RS01570 (I11999_03050) ctsP 311107..311703 (+) 597 WP_075489172.1 ATP-binding protein Machinery gene
  R8953_RS01575 (I11999_03060) ctsX 311700..312296 (+) 597 WP_317727610.1 transformation system protein Machinery gene
  R8953_RS01580 (I11999_03070) ctsE 312289..313851 (+) 1563 WP_317727611.1 GspE/PulE family protein Machinery gene
  R8953_RS01585 (I11999_03080) ctsF 313838..315016 (+) 1179 WP_317727612.1 type II secretion system F family protein Machinery gene
  R8953_RS01590 (I11999_03090) - 315013..315777 (-) 765 WP_317727613.1 TSUP family transporter -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53497.06 Da        Isoelectric Point: 7.0563

>NTDB_id=105588 R8953_RS01565 WP_317727609.1 309696..311114(+) (ctsD) [Campylobacter coli strain IDH-11999]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTVQKKLSSVVQVEN
NQTLILGGLISHNRSQNNNSVNFLSKIPILGSLFRSENENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=105588 R8953_RS01565 WP_317727609.1 309696..311114(+) (ctsD) [Campylobacter coli strain IDH-11999]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGTCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTACAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTCAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATTATGCTTAGAATCAATCCAAGTTTGAGTGATTTTAAGTATCCAGAGGACA
ATAAAAGACAGAAAGAGCCTCGCACTATCGCGCCTGATACAGTTCAAAAAAAGCTTTCAAGTGTGGTACAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTCATTTCTCATAATCGCTCACAAAACAATAATTCTGTGAATTTTTTATCTAAAAT
TCCTATTTTGGGTTCTTTATTTAGAAGTGAGAATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATATAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.508

100

0.805

Multiple sequence alignment