Detailed information
Bioinformatically predicted
Overview
| Name | ctsR | Type | Machinery gene |
| Locus tag | R8953_RS01560 | Genome accession | NZ_AP028409 |
| Coordinates | 309407..309718 (+) | Length | 103 a.a. |
| NCBI ID | WP_002779316.1 | Uniprot ID | A0A3K5JRX6 |
| Organism | Campylobacter coli strain IDH-11999 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 304407..314718
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8953_RS01550 (I11999_03010) | - | 305081..305719 (+) | 639 | WP_002784063.1 | HAD family hydrolase | - |
| R8953_RS01555 (I11999_03020) | nifJ | 305823..309383 (+) | 3561 | WP_002779317.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| R8953_RS01560 (I11999_03030) | ctsR | 309407..309718 (+) | 312 | WP_002779316.1 | hypothetical protein | Machinery gene |
| R8953_RS01565 (I11999_03040) | ctsD | 309696..311114 (+) | 1419 | WP_317727609.1 | pilus (MSHA type) biogenesis protein MshL | Machinery gene |
| R8953_RS01570 (I11999_03050) | ctsP | 311107..311703 (+) | 597 | WP_075489172.1 | ATP-binding protein | Machinery gene |
| R8953_RS01575 (I11999_03060) | ctsX | 311700..312296 (+) | 597 | WP_317727610.1 | transformation system protein | Machinery gene |
| R8953_RS01580 (I11999_03070) | ctsE | 312289..313851 (+) | 1563 | WP_317727611.1 | GspE/PulE family protein | Machinery gene |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 12269.30 Da Isoelectric Point: 6.3244
>NTDB_id=105587 R8953_RS01560 WP_002779316.1 309407..309718(+) (ctsR) [Campylobacter coli strain IDH-11999]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY
Nucleotide
Download Length: 312 bp
>NTDB_id=105587 R8953_RS01560 WP_002779316.1 309407..309718(+) (ctsR) [Campylobacter coli strain IDH-11999]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsR | Campylobacter jejuni subsp. jejuni 81-176 |
55.882 |
99.029 |
0.553 |