Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   R8953_RS01580 Genome accession   NZ_AP028409
Coordinates   312289..313851 (+) Length   520 a.a.
NCBI ID   WP_317727611.1    Uniprot ID   -
Organism   Campylobacter coli strain IDH-11999     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307289..318851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8953_RS01560 (I11999_03030) ctsR 309407..309718 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  R8953_RS01565 (I11999_03040) ctsD 309696..311114 (+) 1419 WP_317727609.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8953_RS01570 (I11999_03050) ctsP 311107..311703 (+) 597 WP_075489172.1 ATP-binding protein Machinery gene
  R8953_RS01575 (I11999_03060) ctsX 311700..312296 (+) 597 WP_317727610.1 transformation system protein Machinery gene
  R8953_RS01580 (I11999_03070) ctsE 312289..313851 (+) 1563 WP_317727611.1 GspE/PulE family protein Machinery gene
  R8953_RS01585 (I11999_03080) ctsF 313838..315016 (+) 1179 WP_317727612.1 type II secretion system F family protein Machinery gene
  R8953_RS01590 (I11999_03090) - 315013..315777 (-) 765 WP_317727613.1 TSUP family transporter -
  R8953_RS01595 (I11999_03100) - 315780..316544 (-) 765 WP_002781156.1 TIGR02757 family protein -
  R8953_RS01600 (I11999_03110) flgK 316561..318387 (-) 1827 WP_002779264.1 flagellar hook-associated protein FlgK -
  R8953_RS01605 (I11999_03120) - 318397..318831 (-) 435 WP_002779263.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59886.37 Da        Isoelectric Point: 5.4706

>NTDB_id=105591 R8953_RS01580 WP_317727611.1 312289..313851(+) (ctsE) [Campylobacter coli strain IDH-11999]
MIERFLFQDYINDKITLEQIYHEHKIDSESFLKALASDENISYSTLEELDLSLGEKFPCSFLLKFKILPILSKENTLYIA
SSKPCSLELLDEIRIFYEAKNIEVLIANEFKIMKFLYKLQVKEKLQNLSANLRLEWKENKYQNEQSYISQIFDFILDEIL
EFNPSDIHIEARENDALIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKAQDGNFELKIKENRYDFRISSLP
LQNGESIVIRILKHNEEILDLENLNLGEKNLAILKKALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPI
EYKMPLVQQILLNPKAGLEFNNALRAILRQDPDIIMIGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTIDRLIDMNA
KPYLIASALRIIITQRLVRKLCPKCKQKSTKIYEIKGDFFEAKGCEHCHHSGYQGRELISECLYIDEEIAQVIREGGYKN
KILELAKAKGFQSMFEQGLQKAKEGITSIDELVRVLNEAL

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=105591 R8953_RS01580 WP_317727611.1 312289..313851(+) (ctsE) [Campylobacter coli strain IDH-11999]
ATGATTGAACGATTTTTATTTCAAGATTATATCAATGATAAAATCACCCTTGAGCAAATTTATCACGAGCATAAAATCGA
TAGTGAAAGTTTTTTAAAAGCTTTAGCTAGTGATGAAAATATTTCTTATTCTACTTTAGAAGAACTTGATCTTAGTTTGG
GTGAAAAATTTCCATGTAGTTTTCTTTTGAAATTTAAAATTCTACCCATTTTGAGTAAGGAAAATACACTTTATATAGCA
AGTTCTAAACCCTGTTCCTTAGAGCTTTTAGATGAAATTAGAATTTTTTACGAAGCTAAAAATATAGAAGTTTTGATCGC
AAATGAATTTAAGATTATGAAATTTTTATACAAACTTCAAGTTAAAGAAAAGCTTCAAAATTTAAGTGCCAATCTTAGAC
TAGAATGGAAAGAAAATAAATACCAAAATGAGCAAAGTTATATCAGTCAAATTTTTGATTTTATACTGGATGAAATTCTT
GAATTTAATCCCAGTGATATACACATAGAAGCAAGAGAAAATGATGCTTTGATAAGATTTAGAGTGGATGGAATTTTACG
CGAATTTGCTTGTCTTGAAAAAGATATTTATGAGGCTTTGGTTTTTCATATTAAATTTTTATCACAGCTTAATGTTGCAG
AATCAAGAAAGGCGCAAGATGGAAATTTTGAGCTTAAAATCAAAGAAAATAGATATGATTTTAGGATTTCATCTTTGCCT
TTGCAAAATGGCGAAAGCATTGTGATAAGAATTTTAAAACACAACGAAGAAATTTTGGATTTAGAAAATTTAAATTTGGG
TGAAAAAAATCTTGCAATTCTAAAAAAAGCCCTATACAACCCTTATGGAATGATTTTACTAACAGGTCCTACAGGAAGTG
GAAAAAGTACAAGTTTGTATGCTTGTTTAAATGAGCTAAAAAGTATAGAAAAGAAAATAATTTCTGTGGAAGATCCCATA
GAATATAAAATGCCTCTAGTTCAGCAAATTTTGCTAAATCCAAAAGCAGGGCTTGAATTTAATAATGCCCTAAGAGCTAT
TTTAAGACAAGATCCTGATATTATCATGATAGGAGAAATCAGAGATGAGGAGAGTCTTGATATAGCGATTAAGGCTTCCT
TAACGGGGCACTTGCTTTTAAGTACCTTGCATACAAATAATGCCATTTCTACCATAGATAGACTCATTGATATGAATGCA
AAGCCTTATTTGATCGCTTCTGCTTTAAGAATCATTATTACCCAGCGTTTAGTGCGCAAACTTTGTCCTAAATGCAAGCA
AAAAAGCACTAAGATTTATGAAATAAAAGGTGATTTCTTTGAGGCTAAAGGTTGTGAGCATTGTCATCATAGTGGATATC
AAGGCAGGGAGCTTATTAGCGAGTGTTTATATATTGATGAGGAAATAGCTCAAGTTATTAGAGAGGGTGGTTATAAAAAT
AAAATTTTAGAGCTTGCCAAAGCAAAGGGTTTTCAAAGTATGTTTGAGCAGGGTTTACAAAAAGCAAAAGAGGGTATAAC
TAGCATAGATGAGCTTGTAAGGGTGCTTAATGAAGCTTTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(27-123)

Type II/IV secretion system protein (T2SSE)

(155-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

66.797

98.462

0.658
  pilB Legionella pneumophila strain ERS1305867

38.078

100

0.396
  pilB Acinetobacter baylyi ADP1

34.821

100

0.375

Multiple sequence alignment