Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFDAU_RS00640 Genome accession   NZ_CP170197
Coordinates   124663..126159 (+) Length   498 a.a.
NCBI ID   WP_413438118.1    Uniprot ID   -
Organism   Sulfuriferula sp. GW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 119663..131159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFDAU_RS00610 (ACFDAU_00610) - 120035..120505 (+) 471 WP_413438110.1 hypothetical protein -
  ACFDAU_RS00615 (ACFDAU_00615) - 120585..121364 (+) 780 WP_413438111.1 DUF2189 domain-containing protein -
  ACFDAU_RS00620 (ACFDAU_00620) - 121457..122863 (-) 1407 WP_413438113.1 ammonium transporter -
  ACFDAU_RS00625 (ACFDAU_00625) glnK 122875..123213 (-) 339 WP_124703621.1 P-II family nitrogen regulator -
  ACFDAU_RS00630 (ACFDAU_00630) - 123278..124081 (-) 804 WP_413438115.1 TorF family putative porin -
  ACFDAU_RS00635 (ACFDAU_00635) - 124384..124653 (+) 270 WP_413438117.1 accessory factor UbiK family protein -
  ACFDAU_RS00640 (ACFDAU_00640) comM 124663..126159 (+) 1497 WP_413438118.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFDAU_RS00645 (ACFDAU_00645) - 126554..128413 (+) 1860 WP_413438120.1 peroxidase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52990.04 Da        Isoelectric Point: 8.0576

>NTDB_id=1055491 ACFDAU_RS00640 WP_413438118.1 124663..126159(+) (comM) [Sulfuriferula sp. GW1]
MGIAVLHSRALSGMDAPEVVVEAHLANGLPSFTIVGLPEAEVKEARDRVRAAIQNARFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPANKLKDYEFAGELALTGELRPIRGALAMTLGAVSSGRAFILPSASALEAALVEGAVVHPADSL
LAVCAHLAGQALLPLQALLPVASVQAHYPDFNEVKGQLGVKRALEVAAAGGHSVLMAGPPGTGKAMLAARFPGILPGMSE
QEAIESAALLSLNGGFRIEHWKRRPYRSPHHTASAVALVGGGGIPRPGEISLAHHGVLFLDELPEFPRSVLEVLREPLES
GRITISRAARQADFPARFQLIAAMNPCPCGYLGHPAGKCRCTPDQIARYRGRISGPLLDRIDIQIEVPALSHEDLLRQPD
GETSVAIQARVEAARVRQIARQGKPNAELGTKEIDTHCAPDAAGEALLKQAISRLNLSARAYHRILKVARTVADLADDEH
IAPRHIAETIQYRRFTGG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=1055491 ACFDAU_RS00640 WP_413438118.1 124663..126159(+) (comM) [Sulfuriferula sp. GW1]
ATGGGCATTGCCGTCCTCCACAGCCGGGCGCTGTCCGGCATGGACGCACCCGAAGTGGTGGTGGAAGCGCATCTCGCCAA
CGGCCTGCCCAGTTTCACCATCGTTGGTTTGCCCGAGGCCGAGGTGAAAGAAGCCCGCGACCGGGTTCGGGCCGCGATCC
AGAACGCACGCTTCGAATTCCCGGCGCGGCGCATCACTGTCAATCTCGCCCCTGCAGACTTGCCCAAGGAATCCGGGCGT
TTTGATCTACCCATCGCGCTTGGTATCCTCGCCGCCTCCGGACAGATCCCCGCCAATAAGCTGAAAGACTACGAATTCGC
CGGCGAGCTGGCCCTGACTGGTGAGCTGCGCCCGATCCGCGGGGCGCTGGCGATGACTCTGGGCGCGGTTTCCAGCGGGC
GTGCGTTTATCCTGCCCAGTGCCAGCGCACTGGAAGCCGCGCTGGTGGAGGGTGCCGTCGTCCACCCCGCCGACTCGCTG
CTGGCAGTCTGCGCTCACCTTGCCGGACAGGCCTTGCTGCCATTGCAGGCGCTGCTGCCGGTGGCATCCGTGCAAGCGCA
TTACCCGGATTTCAACGAAGTCAAAGGCCAGCTCGGCGTCAAACGCGCACTCGAAGTCGCCGCGGCCGGCGGTCATTCGG
TGCTGATGGCAGGACCGCCCGGTACCGGCAAGGCCATGCTGGCGGCACGCTTTCCCGGCATTCTGCCTGGCATGAGCGAA
CAGGAGGCCATCGAATCCGCGGCATTGCTTTCCTTGAACGGCGGTTTTCGCATCGAGCACTGGAAGCGCCGCCCCTACCG
CAGCCCGCACCATACCGCTTCGGCGGTGGCGCTGGTGGGCGGCGGCGGGATTCCGCGACCGGGCGAGATCTCACTGGCGC
ACCACGGCGTGCTGTTCCTCGACGAGTTGCCGGAATTCCCGCGCAGCGTGCTGGAGGTATTGCGCGAGCCTTTGGAATCG
GGGCGCATCACCATTTCGCGCGCCGCCCGGCAGGCTGATTTTCCTGCACGTTTTCAATTGATCGCGGCGATGAACCCGTG
CCCGTGCGGCTACCTCGGCCATCCAGCAGGCAAATGCCGCTGCACGCCGGACCAGATTGCGCGCTATCGCGGGCGCATCT
CCGGCCCGCTGCTCGACCGCATCGACATCCAGATCGAAGTCCCCGCGCTATCGCACGAGGATTTATTGCGTCAGCCCGAT
GGCGAAACCAGCGTCGCGATTCAGGCCAGGGTGGAAGCTGCACGCGTCCGCCAGATTGCGCGCCAAGGCAAGCCCAACGC
TGAGCTCGGCACCAAGGAAATCGATACCCACTGCGCACCGGATGCGGCTGGCGAAGCGCTGCTGAAACAAGCCATCAGCC
GTCTCAACTTGTCGGCACGGGCCTACCACCGCATCCTCAAAGTCGCGCGTACGGTGGCTGACCTGGCGGATGACGAGCAC
ATCGCCCCGCGCCATATTGCCGAAACTATCCAGTACCGGCGCTTTACGGGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.758

99.398

0.554
  comM Vibrio campbellii strain DS40M4

54.747

99.398

0.544
  comM Haemophilus influenzae Rd KW20

52.705

100

0.528
  comM Glaesserella parasuis strain SC1401

52.4

100

0.526
  comM Legionella pneumophila str. Paris

50.398

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.398

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.509

100

0.458

Multiple sequence alignment