Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DI45_RS07285 Genome accession   NZ_CP007560
Coordinates   1403642..1404307 (-) Length   221 a.a.
NCBI ID   WP_047235420.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS743     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398642..1409307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DI45_RS07280 (DI45_07570) hpf 1403014..1403562 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DI45_RS07285 (DI45_07575) comFC/cflB 1403642..1404307 (-) 666 WP_047235420.1 ComF family protein Machinery gene
  DI45_RS07290 (DI45_07580) comFA/cflA 1404279..1405604 (-) 1326 WP_047235421.1 DEAD/DEAH box helicase Machinery gene
  DI45_RS07295 (DI45_07585) - 1405659..1406291 (+) 633 WP_002983676.1 YigZ family protein -
  DI45_RS07300 (DI45_07590) cysK 1406419..1407360 (+) 942 WP_011528853.1 cysteine synthase A -
  DI45_RS07305 (DI45_07595) - 1407378..1407755 (-) 378 WP_047235422.1 S1 RNA-binding domain-containing protein -
  DI45_RS07310 (DI45_07600) - 1407755..1409155 (-) 1401 WP_011054832.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25165.34 Da        Isoelectric Point: 9.3379

>NTDB_id=105548 DI45_RS07285 WP_047235420.1 1403642..1404307(-) (comFC/cflB) [Streptococcus pyogenes strain NGAS743]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILEAADVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDNYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=105548 DI45_RS07285 WP_047235420.1 1403642..1404307(-) (comFC/cflB) [Streptococcus pyogenes strain NGAS743]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
CCCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTGATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATAATTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407