Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | R8567_RS03280 | Genome accession | NZ_AP028407 |
| Coordinates | 641145..642104 (-) | Length | 319 a.a. |
| NCBI ID | WP_002780619.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain IDH-11847 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 636145..647104
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8567_RS03250 (I11847_06340) | - | 637111..637311 (+) | 201 | WP_002812791.1 | cbb3-type cytochrome oxidase assembly protein | - |
| R8567_RS03255 (I11847_06350) | - | 637341..637640 (-) | 300 | WP_002777238.1 | cytochrome c | - |
| R8567_RS03260 (I11847_06360) | - | 637717..638279 (+) | 563 | Protein_634 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| R8567_RS03265 (I11847_06370) | rfaD | 638276..639229 (+) | 954 | WP_002780616.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| R8567_RS03270 (I11847_06380) | rfaE1 | 639222..640607 (+) | 1386 | WP_317646719.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| R8567_RS03275 (I11847_06390) | gmhA | 640604..641164 (+) | 561 | WP_317646720.1 | D-sedoheptulose 7-phosphate isomerase | - |
| R8567_RS03280 (I11847_06400) | waaF | 641145..642104 (-) | 960 | WP_002780619.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| R8567_RS03285 (I11847_06410) | - | 642163..642981 (+) | 819 | WP_002780620.1 | glycosyltransferase family 2 protein | - |
| R8567_RS03290 (I11847_06420) | - | 642993..644120 (+) | 1128 | WP_002780621.1 | polysaccharide pyruvyl transferase family protein | - |
| R8567_RS03295 (I11847_06430) | - | 644353..644886 (+) | 534 | WP_317646724.1 | hypothetical protein | - |
| R8567_RS03300 (I11847_06440) | - | 644963..645151 (+) | 189 | WP_032682936.1 | sulfatase-like hydrolase/transferase | - |
| R8567_RS03305 (I11847_06450) | - | 645156..646301 (+) | 1146 | WP_317646730.1 | sulfatase-like hydrolase/transferase | - |
| R8567_RS03310 (I11847_06460) | - | 646487..646621 (+) | 135 | WP_002780627.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36674.17 Da Isoelectric Point: 10.2602
>NTDB_id=105549 R8567_RS03280 WP_002780619.1 641145..642104(-) (waaF) [Campylobacter coli strain IDH-11847]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=105549 R8567_RS03280 WP_002780619.1 641145..642104(-) (waaF) [Campylobacter coli strain IDH-11847]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.417 |
100 |
0.934 |