Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACFC2F_RS14410 Genome accession   NZ_CP170190
Coordinates   2992102..2993622 (-) Length   506 a.a.
NCBI ID   WP_379931449.1    Uniprot ID   -
Organism   Enterobacter sichuanensis strain B36     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2987102..2998622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFC2F_RS14400 (ACFC2F_14400) hdfR 2990798..2991619 (-) 822 WP_025757599.1 HTH-type transcriptional regulator HdfR -
  ACFC2F_RS14405 (ACFC2F_14405) - 2991738..2992076 (+) 339 WP_025757596.1 DUF413 domain-containing protein -
  ACFC2F_RS14410 (ACFC2F_14410) comM 2992102..2993622 (-) 1521 WP_379931449.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACFC2F_RS14415 (ACFC2F_14415) ilvL 2993963..2994061 (+) 99 WP_001311244.1 ilv operon leader peptide -
  ACFC2F_RS14420 (ACFC2F_14420) ilvX 2994148..2994198 (+) 51 WP_102046757.1 peptide IlvX -
  ACFC2F_RS14425 (ACFC2F_14425) ilvG 2994201..2995847 (+) 1647 WP_104557590.1 acetolactate synthase 2 catalytic subunit -
  ACFC2F_RS14430 (ACFC2F_14430) ilvM 2995844..2996107 (+) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  ACFC2F_RS14435 (ACFC2F_14435) ilvE 2996126..2997055 (+) 930 WP_013099287.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55053.01 Da        Isoelectric Point: 7.3876

>NTDB_id=1055476 ACFC2F_RS14410 WP_379931449.1 2992102..2993622(-) (comM) [Enterobacter sichuanensis strain B36]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTSRLGSYEFIGELALTGALRGVPGAISGALEAIRAGREIILANENSAEVSLIAEKGCLIAGHL
QEVCAHLEGRHRLSEPEETEDIPPESTDDLSDIIGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLNGLLPPLSNH
EALESAAIVSLVSSVSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPSGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLSQSSIRG
ESSVTVRDRVIAAQARQYRRQNKLNARLDNAEIRQFCQLKAEDATWLEETLARFGLSIRAWQRLLKVARTIADVESSHVI
ERQHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1055476 ACFC2F_RS14410 WP_379931449.1 2992102..2993622(-) (comM) [Enterobacter sichuanensis strain B36]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTATTGGGGTAAAAGCACCGCTTATTTCTGTAGAGGTTCATCTGAGCAA
TGGACTCCCTGGCCTAACGCTTGTCGGCTTGCCAGAGACTACGGTGAAAGAAGCCAGAGATCGGGTCCGTAGCGCCATTA
TCAATAGCGGTTATACCTTCCCGGCGAAAAAGATCACTATCAACCTGGCACCAGCGGATCTGCCTAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTATTGCGCTTCTCGCCGCTTCTGAACAGCTTAATACCTCCAGGCTAGGCTCGTACGAGTTCAT
CGGTGAACTGGCGCTTACAGGCGCACTGAGAGGCGTTCCTGGCGCTATCTCTGGTGCGCTTGAAGCCATACGTGCCGGTC
GGGAAATCATTCTTGCCAATGAAAACAGTGCTGAAGTGAGCCTGATAGCCGAAAAAGGGTGCCTTATTGCCGGGCATTTG
CAGGAGGTCTGCGCCCATCTAGAAGGGCGGCATAGGTTATCAGAGCCCGAAGAAACGGAAGATATACCGCCTGAAAGCAC
CGACGATCTCAGCGATATTATCGGTCAGGAGCAGGGAAAGCGAGCGCTGGAGATCACCGCTGCCGGCGGGCATAACTTGT
TACTGATTGGCCCGCCGGGTACCGGAAAAACGATGCTGGCGAGCCGGTTGAATGGTTTACTTCCACCACTCAGTAACCAT
GAAGCACTCGAAAGCGCTGCGATAGTGAGCCTGGTGAGTTCAGTGTCGTTGCAAAAACAGTGGCGACGTCGCCCTTTCCG
CTCTCCGCACCACAGCGCGTCCCTGACGGCCATGGTCGGAGGAGGTTCCATTCCGGGGCCAGGAGAGATTTCACTGGCAC
ATAACGGCATCCTGTTTCTTGATGAACTACCTGAGTTTGAGCGGCGCGTGCTGGATGCCCTAAGGGAGCCGATTGAGTCC
GGAGAGATACATATCTCACGTACCCGAGCCAAAATAAGCTATCCGGCACAGTTCCAGCTGGTTGCGGCAATGAACCCCAG
CCCGTCAGGTCATTATCAGGGGAATCACAACCGCTGTACGCCTGAACAAACGCTGCGATATCTGGGAAAGTTATCAGGCC
CTTTCCTGGATCGTTTCGATTTATCCCTGGAGATCCCTTTGCCTCCTCCCGGCCTGCTCAGCCAGAGCAGTATCAGAGGA
GAGTCTTCAGTAACGGTTCGCGATCGGGTTATTGCTGCTCAGGCCCGGCAGTACAGGCGTCAAAATAAACTGAATGCCCG
TCTGGATAATGCTGAGATCCGACAGTTTTGCCAGTTAAAGGCTGAGGACGCAACGTGGCTGGAGGAAACGTTGGCGCGCT
TCGGGCTCTCCATTCGTGCATGGCAGCGTCTTTTAAAAGTGGCCCGTACTATCGCCGATGTGGAAAGCAGTCATGTAATT
GAGAGACAGCATCTGCAGGAAGCGCTGAGCTATCGGGCGATCGACCGTTTACTTTTGCACCTGCAAAAGTTACTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Vibrio campbellii strain DS40M4

58.73

99.605

0.585
  comM Legionella pneumophila str. Paris

50.302

98.221

0.494
  comM Legionella pneumophila strain ERS1305867

50.302

98.221

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.133

100

0.441

Multiple sequence alignment