Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LMH68_RS08080 Genome accession   NZ_CP170175
Coordinates   1771810..1773333 (+) Length   507 a.a.
NCBI ID   WP_017058783.1    Uniprot ID   -
Organism   Vibrio sp. F13 strain 10N.222.55.B3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1766810..1778333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LMH68_RS08065 (LMH68_008065) - 1768415..1769383 (-) 969 WP_017063017.1 branched-chain amino acid transaminase -
  LMH68_RS08070 (LMH68_008070) ilvM 1769396..1769680 (-) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  LMH68_RS08075 (LMH68_008075) ilvG 1769682..1771328 (-) 1647 WP_102321080.1 acetolactate synthase 2 catalytic subunit -
  LMH68_RS08080 (LMH68_008080) comM 1771810..1773333 (+) 1524 WP_017058783.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LMH68_RS08085 (LMH68_008085) - 1773396..1774352 (-) 957 WP_017066751.1 DUF2860 domain-containing protein -
  LMH68_RS08090 (LMH68_008090) - 1774492..1775091 (-) 600 WP_017063015.1 thiol:disulfide interchange protein DsbA/DsbL -
  LMH68_RS08095 (LMH68_008095) - 1775147..1776133 (-) 987 WP_017058781.1 serine/threonine protein kinase -
  LMH68_RS08100 (LMH68_008100) ccoG 1776207..1777625 (-) 1419 WP_017058780.1 cytochrome c oxidase accessory protein CcoG -
  LMH68_RS08105 (LMH68_008105) - 1777952..1778215 (-) 264 WP_009848104.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55525.65 Da        Isoelectric Point: 7.6370

>NTDB_id=1055436 LMH68_RS08080 WP_017058783.1 1771810..1773333(+) (comM) [Vibrio sp. F13 strain 10N.222.55.B3]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADSVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEHHQADVSVLRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVRQARELMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=1055436 LMH68_RS08080 WP_017058783.1 1771810..1773333(+) (comM) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGGGACTCGCGATAATTCATAGCCGAGCTAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAGGTGCATATAAGCAA
CGGAATGCCTGGCTTCACGCTGGTGGGTCTACCTGAAACAACGGTCAAGGAATCTAAAGACCGAGTGAGAAGCGCGATCA
TCAATTCTCGCTTTGAGTTTCCATCGAAAAGAATCACGGTCAATCTCGCCCCAGCCGATTTGCCCAAAGAAGGTGGCCGT
TTTGACCTGCCCATCGCGCTTGGGATTTTGGTGGCGTCAGATCAGCTTCCGACATCAAAAATAGCTCAACATGAATTTAT
CGGTGAGTTGGCATTGTCAGGAGAACTTCGCTCGGTAAAGGGCGTTTTGCCTGCGACGTTAGCCGCCGACAGTGTAGAGC
GATGCTTAGTTGTCCCACATCATAACGGTGATCAGGCTGCGCTGGTGGGCAAGGGAGCGCATAAATCTGCACAAACCTTG
TTGGAGGTTTGTGCTGACATGTGTGGACAGGCTCAGCTTGGGCTATATAGAACGGAACATCATCAGGCTGATGTTTCAGT
GCTTCGCGACCTACAAGATATTATCGGCCAACAACAAGGAAAGCGAGCTCTAGAGATAGCCGCTGCTGGGAATCATAACT
TATTGTTTCTTGGCCCACCCGGAACCGGAAAAACTATGCTCGCTTCTCGACTGCGTGACCTATTACCTGAAATGAGTGAT
GACGAAGCGATGGAAACCGCGTCGGTGGCCTCGTTAACGCAACAAGAAATCAATCAATACAACTGGAAGCAACGACCTTT
TCGCTCTCCTCACCATTCCAGTTCAATGGCGGCATTAGTGGGTGGTGGTTCGGTGCCTCGCCCCGGAGAGATCTCTTTAG
CGCATAACGGCTTATTGTTCTTAGATGAGATGCCGGAGTTTGAGCGCAAGGTGCTTGATTCATTACGAGAGCCACTAGAG
TCGGGCGAGATCATTATCTCCCGTGCTGCGGGCAAGACTCGTTTTCCTGCGCGTTTTCAATTGGTCGGTGCACTTAACCC
AAGTCCAACGGGTTATTACGAAGGTAACCAGGCGCGCGCCAACCCACAGATCATCCTGCGTTACCTCAATCGCTTATCTG
GGCCCTTGCTGGATAGGTTCGATATGTCATTGGAGATACCTCTGTTGCCAAAAGGAATGTTGGCCGAAGGCGGTGATCGC
GGTGAAACCACTCAAGTAGTTAAGCAAAGGGTTAGGCAGGCGCGAGAGTTAATGCTATCTCGCAACCATAAATCGAATGC
ACTGTTAGGTAGCCGAGAAATTGAGAAGTATTGCCCACTGCGACGCGAAGATGCAGAGTTTCTTGAGACAGCACTACATC
GCTTGGGTTTATCGATTCGTGCTTATCATCGAATTATTAAGGTGGCACGAACCATTGCCGACCTTGACGGTAACGAGCAG
ATCGAAAAGAAACATCTATCAGAAGCGCTAGGCTATCGCGCGATGGATCGCTTGCTGAAACAACTCACGGCTCAAGCTGT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.826

100

0.838
  comM Vibrio campbellii strain DS40M4

83.629

100

0.836
  comM Haemophilus influenzae Rd KW20

65.286

100

0.653
  comM Glaesserella parasuis strain SC1401

63.333

100

0.637
  comM Legionella pneumophila str. Paris

48.992

97.83

0.479
  comM Legionella pneumophila strain ERS1305867

48.992

97.83

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.49

99.803

0.424

Multiple sequence alignment