Detailed information
Bioinformatically predicted
Overview
| Name | qstR | Type | Regulator |
| Locus tag | LMH68_RS06240 | Genome accession | NZ_CP170175 |
| Coordinates | 1389810..1390457 (+) | Length | 215 a.a. |
| NCBI ID | WP_029235590.1 | Uniprot ID | A0A4U2APF3 |
| Organism | Vibrio sp. F13 strain 10N.222.55.B3 | ||
| Function | promote expression of competence genes (predicted from homology) Competence regulation |
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Genomic Context
Location: 1384810..1395457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH68_RS06225 (LMH68_006230) | - | 1385352..1386794 (-) | 1443 | WP_229648292.1 | MSHA biogenesis protein MshI | - |
| LMH68_RS06230 (LMH68_006235) | csrD | 1386797..1388812 (-) | 2016 | WP_229648293.1 | RNase E specificity factor CsrD | - |
| LMH68_RS06235 (LMH68_006240) | ssb | 1388974..1389531 (-) | 558 | WP_017061342.1 | single-stranded DNA-binding protein | Machinery gene |
| LMH68_RS06240 (LMH68_006245) | qstR | 1389810..1390457 (+) | 648 | WP_029235590.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| LMH68_RS06245 (LMH68_006250) | galU | 1390615..1391487 (+) | 873 | WP_017061340.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| LMH68_RS06250 (LMH68_006255) | uvrA | 1391637..1394468 (+) | 2832 | WP_017061339.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 215 a.a. Molecular weight: 25194.31 Da Isoelectric Point: 9.2504
>NTDB_id=1055432 LMH68_RS06240 WP_029235590.1 1389810..1390457(+) (qstR) [Vibrio sp. F13 strain 10N.222.55.B3]
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIVLYKMTPDELMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
MRKSRYARTLHFLCIDPNDTYLHVKEIEKHLSIVLYKMTPDELMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTEQKDKIARGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA
Nucleotide
Download Length: 648 bp
>NTDB_id=1055432 LMH68_RS06240 WP_029235590.1 1389810..1390457(+) (qstR) [Vibrio sp. F13 strain 10N.222.55.B3]
ATGAGAAAATCAAGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAACGATACCTATCTACATGTAAAAGAGAT
AGAAAAGCATTTATCTATTGTTCTCTACAAAATGACACCCGACGAATTAATGCTAGTTGATAGAAAGCAGAGTAACCGGA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGTCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTCCCCCAGCAACTTCCAACCTCAGAGCTTCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGCAATATGGTCAATACCAACACCACACCAACCAATGTTGATTTAACCATTCGTGAGATC
CAGGTGATTCGCTGTCTTCAATCCGGGTCTTCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTCTATCAAATATTCCGTAAGCTTGCGGTAAAAAATAGAGTTCAAGCGATAGCATGGGCAAACCAGAACCTGC
TTGCATAA
ATGAGAAAATCAAGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCAAACGATACCTATCTACATGTAAAAGAGAT
AGAAAAGCATTTATCTATTGTTCTCTACAAAATGACACCCGACGAATTAATGCTAGTTGATAGAAAGCAGAGTAACCGGA
TCTTGCTCGTCGATTACAGAGAGGTACCACAACTACTGATTATTTGTCCTAACCTGACTGTTATGTGGAAAAATCACGAA
ATCATTTTATTCAATGTCCCCCAGCAACTTCCAACCTCAGAGCTTCTTACCTATGGGGTACTAAAAGGACTCTTTTACAA
CACTGAACAAAAGGACAAGATTGCTCGTGGTCTTCAAGAAGTCATTGATGGCGATAACTGGCTGCCAAGGAAGGTAACCA
ATCAACTGTTGTTTTATTATCGCAATATGGTCAATACCAACACCACACCAACCAATGTTGATTTAACCATTCGTGAGATC
CAGGTGATTCGCTGTCTTCAATCCGGGTCTTCAAACACACAAATCGCCGATGACTTGTTTATTAGTGAGTTCACGGTTAA
ATCTCACCTCTATCAAATATTCCGTAAGCTTGCGGTAAAAAATAGAGTTCAAGCGATAGCATGGGCAAACCAGAACCTGC
TTGCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| qstR | Vibrio campbellii strain DS40M4 |
53.023 |
100 |
0.53 |
| qstR | Vibrio parahaemolyticus RIMD 2210633 |
52.558 |
100 |
0.526 |
| qstR | Vibrio cholerae strain A1552 |
48.598 |
99.535 |
0.484 |